Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G22
(563 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 136 9e-33
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 136 9e-33
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 136 9e-33
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 75 5e-14
07_03_1357 - 25982861-25983068,25983354-25983361 55 5e-08
07_03_1358 - 25984897-25984997,25985623-25985650 47 1e-05
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 32 0.27
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 29 3.4
10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022 28 4.5
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 28 4.5
01_05_0433 - 22094784-22095659 28 5.9
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 27 7.8
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 27 7.8
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 136 bits (330), Expect = 9e-33
Identities = 63/80 (78%), Positives = 72/80 (90%)
Frame = +2
Query: 323 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 502
DYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S
Sbjct: 96 DYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESE 155
Query: 503 KHIDFSLKSPFGGGRPGRVK 562
KHIDFSL SPFGGG PGRVK
Sbjct: 156 KHIDFSLTSPFGGGPPGRVK 175
Score = 104 bits (249), Expect = 6e-23
Identities = 45/68 (66%), Positives = 57/68 (83%)
Frame = +3
Query: 63 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 242
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 243 KRLFEGNA 266
+R+FEG A
Sbjct: 70 RRIFEGEA 77
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 136 bits (330), Expect = 9e-33
Identities = 63/80 (78%), Positives = 72/80 (90%)
Frame = +2
Query: 323 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 502
DYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S
Sbjct: 119 DYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESE 178
Query: 503 KHIDFSLKSPFGGGRPGRVK 562
KHIDFSL SPFGGG PGRVK
Sbjct: 179 KHIDFSLTSPFGGGPPGRVK 198
Score = 103 bits (246), Expect = 1e-22
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +3
Query: 69 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 248
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 94
Query: 249 LFEGNA 266
+FEG A
Sbjct: 95 IFEGEA 100
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 136 bits (330), Expect = 9e-33
Identities = 63/80 (78%), Positives = 72/80 (90%)
Frame = +2
Query: 323 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 502
DYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S
Sbjct: 312 DYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESE 371
Query: 503 KHIDFSLKSPFGGGRPGRVK 562
KHIDFSL SPFGGG PGRVK
Sbjct: 372 KHIDFSLTSPFGGGPPGRVK 391
Score = 104 bits (249), Expect = 6e-23
Identities = 45/68 (66%), Positives = 57/68 (83%)
Frame = +3
Query: 63 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 242
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 285
Query: 243 KRLFEGNA 266
+R+FEG A
Sbjct: 286 RRIFEGEA 293
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 74.5 bits (175), Expect = 5e-14
Identities = 37/68 (54%), Positives = 48/68 (70%)
Frame = +3
Query: 63 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 242
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV +ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 243 KRLFEGNA 266
+R+FEG A
Sbjct: 59 RRIFEGEA 66
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/41 (65%), Positives = 31/41 (75%)
Frame = +2
Query: 323 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 445
DYVL L +E+FL+ RLQT VFK G KSIHH +LIRQ HI
Sbjct: 85 DYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/39 (69%), Positives = 30/39 (76%)
Frame = +2
Query: 446 RVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVK 562
RV +Q+VNIPSFIVRL+S KHI FSL SP GG RVK
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVK 41
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 63 FSKTYVTPRRPFEKARLDQELKIIGEYG 146
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 362 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 487
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 344 IEDFLERRLQTQVFKAGLAKSIHHAR 421
+ED+ E L T F A L KS+H AR
Sbjct: 110 VEDYFEGSLHTLDFLAALDKSLHRAR 135
>10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022
Length = 587
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 376 SGVQGWSCEVNPSCPHLDQTEAY 444
+GV WS VNPS +L TEA+
Sbjct: 107 AGVSTWSLRVNPSSGNLHPTEAH 129
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 117 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 239
Q L+ I G+ + +E++ + +L RIR R LT+E D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252
>01_05_0433 - 22094784-22095659
Length = 291
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -3
Query: 552 PGRPPPNGDFREKSMCLPESRRTMNEGMFTTC 457
PGR PP +R K M P RR G C
Sbjct: 48 PGRVPPPPMYRPKPMQAPARRRRSRRGWCCAC 79
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +3
Query: 96 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAR----ELLTLE 230
FE A+ ++ KII E R+ ++ +KY LA A ELL L+
Sbjct: 394 FEMAKQEESKKIISEEHQRSNEQITDLKYKLANCMNALESKNLELLNLQ 442
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -1
Query: 425 RCGHDGLTSQDQP*TPESEDGAPRSPQSSNRAHNPSFICFLIKH 294
+C T +P P +DG + ++ H PS +CF+ H
Sbjct: 2783 KCEDSTETGDHEPNEPNGKDGISKQAETRQSVHVPS-VCFVDLH 2825
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,839,392
Number of Sequences: 37544
Number of extensions: 333658
Number of successful extensions: 926
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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