Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G22
(563 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical pr... 152 1e-37
U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical pr... 35 0.046
U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical pr... 30 1.0
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 30 1.3
U76402-1|AAB39734.1| 777|Caenorhabditis elegans degenerin protein. 28 5.3
U40798-3|AAA81473.2| 777|Caenorhabditis elegans Uncoordinated p... 28 5.3
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical pr... 27 7.0
U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical pr... 27 7.0
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr... 27 7.0
AL161712-12|CAC70144.1| 789|Caenorhabditis elegans Hypothetical... 27 7.0
AC093703-2|AAL77187.3| 473|Caenorhabditis elegans Hypothetical ... 27 9.3
>Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical
protein F40F8.10 protein.
Length = 189
Score = 152 bits (369), Expect = 1e-37
Identities = 71/86 (82%), Positives = 79/86 (91%)
Frame = +2
Query: 305 ENR*NWDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 484
E + DYVLGLK+EDFLERRLQTQVFK GLAKSIHHARILI+Q HIRVR+QVV++PSFI
Sbjct: 88 ETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRRQVVDVPSFI 147
Query: 485 VRLDSGKHIDFSLKSPFGGGRPGRVK 562
VRLDS KHIDFSL+SP+GGGRPGRVK
Sbjct: 148 VRLDSQKHIDFSLQSPYGGGRPGRVK 173
Score = 124 bits (298), Expect = 6e-29
Identities = 57/73 (78%), Positives = 66/73 (90%)
Frame = +3
Query: 48 RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 227
R+ +V SK +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3 RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62
Query: 228 EEKDPKRLFEGNA 266
E+KDPKRLFEGNA
Sbjct: 63 EDKDPKRLFEGNA 75
>U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical
protein C48B6.2 protein.
Length = 183
Score = 34.7 bits (76), Expect = 0.046
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 353 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 529
F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S I ++ S
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163
>U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical
protein K09H11.4 protein.
Length = 630
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -1
Query: 497 SPGGR*TKECSPPACGHEYASV*SRCGHDGLTSQDQP*TPESEDGAPRSPQSSNRAHNPS 318
SPGG ++ +P G + S R G DG Q Q + + D + SS R H+ S
Sbjct: 434 SPGGSAGRQAAP---GDDVGSSEDRSGQDGRRVQQQNASTPASDNSSSHDDSSERRHSTS 490
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 394 SCEVNPSCPHLDQTEAYSCPQAGGEHS 474
+CE+N CP D ++CP GG H+
Sbjct: 363 ACELN--CPKCDPKHTFTCPAVGGIHN 387
>U76402-1|AAB39734.1| 777|Caenorhabditis elegans degenerin protein.
Length = 777
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -3
Query: 237 PSPRVSTVHGQPYGCERACT*RATLHAC-CGD 145
P P + H P GC R C L C CGD
Sbjct: 540 PVPYIYNEHYSPEGCHRNCFQLKVLEICGCGD 571
>U40798-3|AAA81473.2| 777|Caenorhabditis elegans Uncoordinated
protein 8 protein.
Length = 777
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -3
Query: 237 PSPRVSTVHGQPYGCERACT*RATLHAC-CGD 145
P P + H P GC R C L C CGD
Sbjct: 540 PVPYIYNEHYSPEGCHRNCFQLKVLEICGCGD 571
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
K04H4.2c protein.
Length = 1446
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +1
Query: 355 LGAPSSDSGVQGWSCEVNPSCPHLDQTEAYSCP 453
+GA S G++C N CP T + CP
Sbjct: 937 VGACMSGRCASGYTCSNNVCCPQTTTTNPFVCP 969
>Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical
protein K04H4.2b protein.
Length = 788
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +1
Query: 355 LGAPSSDSGVQGWSCEVNPSCPHLDQTEAYSCP 453
+GA S G++C N CP T + CP
Sbjct: 279 VGACMSGRCASGYTCSNNVCCPQTTTTNPFVCP 311
>Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical
protein K04H4.2a protein.
Length = 628
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +1
Query: 355 LGAPSSDSGVQGWSCEVNPSCPHLDQTEAYSCP 453
+GA S G++C N CP T + CP
Sbjct: 279 VGACMSGRCASGYTCSNNVCCPQTTTTNPFVCP 311
>U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical
protein R07E4.1b protein.
Length = 986
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/42 (23%), Positives = 28/42 (66%)
Frame = +2
Query: 341 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 466
++EDFLE+ ++ ++ ++ ++I H+R LI+ + ++ ++
Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205
>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
protein R07E4.1a protein.
Length = 1122
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/42 (23%), Positives = 28/42 (66%)
Frame = +2
Query: 341 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 466
++EDFLE+ ++ ++ ++ ++I H+R LI+ + ++ ++
Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341
>AL161712-12|CAC70144.1| 789|Caenorhabditis elegans Hypothetical
protein Y66D12A.15 protein.
Length = 789
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -2
Query: 544 AAAERRLQREVNVLAGVQADDERRNVHHLLADTNMPLSDQDAGM 413
A+ E +LQ VLA AD E +V LAD + +S ++A M
Sbjct: 716 ASKESQLQLLQQVLATSDADAEEEDVKEELADGTIRISRREATM 759
>AC093703-2|AAL77187.3| 473|Caenorhabditis elegans Hypothetical
protein Y20F4.2 protein.
Length = 473
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +1
Query: 385 QGWSCEVNPSCPHLDQTEAYSCPQ--AGGEHSFVHRP 489
Q W + S P++ Q +YS PQ +H HRP
Sbjct: 67 QPWGHNLGGSLPNVHQMPSYSPPQWPPNWQHEIQHRP 103
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,772,436
Number of Sequences: 27780
Number of extensions: 265800
Number of successful extensions: 868
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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