Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G22
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   141   3e-34
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   139   1e-33
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei...    32   0.23 
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    29   2.8  
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden...    28   5.0  
At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger) fa...    28   5.0  
At4g15880.1 68417.m02413 Ulp1 protease family protein contains P...    27   8.7  

>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  141 bits (342), Expect = 3e-34
 Identities = 66/86 (76%), Positives = 77/86 (89%)
 Frame = +2

Query: 305 ENR*NWDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 484
           E++   DYVL L +E+FLERRLQT VFK+G+AKSIHH+R+LIRQRHIRV KQ+VNIPSF+
Sbjct: 90  ESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSFM 149

Query: 485 VRLDSGKHIDFSLKSPFGGGRPGRVK 562
           VRLDS KHIDF+L SPFGGGRPGRVK
Sbjct: 150 VRLDSQKHIDFALTSPFGGGRPGRVK 175



 Score =  111 bits (267), Expect = 3e-25
 Identities = 49/85 (57%), Positives = 64/85 (75%)
 Frame = +3

Query: 63  FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 242
           + KT+  PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P
Sbjct: 10  YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69

Query: 243 KRLFEGNAXXXXXXXXXXXDEKTDE 317
           +R+FEG A           DE  ++
Sbjct: 70  RRIFEGEALLRRMNRYGLLDESQNK 94


>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  139 bits (336), Expect = 1e-33
 Identities = 63/80 (78%), Positives = 74/80 (92%)
 Frame = +2

Query: 323 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 502
           DYVL L +E+FLERRLQT VFK+G+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S 
Sbjct: 96  DYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQ 155

Query: 503 KHIDFSLKSPFGGGRPGRVK 562
           KH+DFSL SPFGGGRPGRVK
Sbjct: 156 KHVDFSLTSPFGGGRPGRVK 175



 Score =  114 bits (274), Expect = 4e-26
 Identities = 52/77 (67%), Positives = 64/77 (83%)
 Frame = +3

Query: 36  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 215
           MVN R    + KT+  PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARE
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 216 LLTLEEKDPKRLFEGNA 266
           LLTL+EK+P+R+FEG A
Sbjct: 61  LLTLDEKNPRRIFEGEA 77


>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
           40S RIBOSOMAL PROTEINs - different species
          Length = 182

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 338 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 487
           L +  F  RRL T +     A+    A   I Q H+RV  + +  P+F+V
Sbjct: 99  LSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPETITDPAFLV 148


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 69  KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 185
           K ++ PRR P  +    Q E K   EYG RN  E W +  T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519


>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) identical
            to HAC5 (GI:21105780) [Arabidopsis thaliana]; similar to
            CREB-binding protein GB:S39162 from [Homo sapiens]
          Length = 1670

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +1

Query: 385  QGWSCEVNPSCPHLDQTEAYSCPQAGGEHSFVHRP 489
            QGW CEV   CP  D   A         HS + RP
Sbjct: 1515 QGWRCEV---CPDYDVCNACYSKGINHPHSIISRP 1546


>At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 381

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +1

Query: 196 SVRLPVNC*HSRRRILRDCLKAMLYYVVWLGSECLMRKQMKLG 324
           S+R P++   +R+R+L    + ++  V W G++ + RK M  G
Sbjct: 186 SLRTPID--DNRKRVLTSPDERLIDSVAWTGNQSMPRKSMSTG 226


>At4g15880.1 68417.m02413 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; low similarity to
           sentrin/SUMO-specific protease [Homo sapiens]
           GI:6906859;  identical to cDNA hypothetical protein,
           partial (1189 bp) GI:2326349
          Length = 489

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 54  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREV 167
           P    K    PR PF     D+E ++   +  RN+R+V
Sbjct: 242 PKTVEKRVEVPREPFIPLTEDEEAEVYRAFSGRNRRKV 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,095,437
Number of Sequences: 28952
Number of extensions: 246498
Number of successful extensions: 659
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)