Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G21
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.11 |vps55||vacuolar sorting protein Vps55 |Schizosacchar...    29   0.49 
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    27   1.5  
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb...    25   4.6  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    25   6.1  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   8.0  

>SPAC630.11 |vps55||vacuolar sorting protein Vps55
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 304 LVSLAFAGSIGMTFVILACALPQYKTWWPFFV 399
           ++ L+   ++G   VIL+CAL  +K W+P  +
Sbjct: 7   IIGLSSVLAVGFMLVILSCAL--FKNWYPLLI 36


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 222 FGASSVTITILIY*IEDSWNHDCNGDPHLISYIFY 118
           F  SS T+T L      +WNH C+G  HL+  + Y
Sbjct: 252 FAGSSATLTYLDIVPARTWNHLCHG--HLVMCMGY 284


>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 478 QNYCQLCHLCAGVQSLLLWDTIHRKVQQRMATMFY 374
           +NY   C +      L LWDT  ++  +R+  M Y
Sbjct: 43  ENYVSDCRVDGKSVQLALWDTAGQEEYERLRPMSY 77


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -1

Query: 250 YL*IRNNNTFRRIKCHYYNIDILNRRFMESRL 155
           ++ ++N++    ++C  YN+D  + +  ESRL
Sbjct: 383 FISVKNSSDLFLVRCDLYNVDHGSLKIEESRL 414


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 214  CAEMYYYFLFISMSFLYSMYHRT 282
            CA++Y+Y  F  MS L S  H T
Sbjct: 1693 CAKLYFYTAFECMSSLKSDSHDT 1715


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,226
Number of Sequences: 5004
Number of extensions: 48202
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)