Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G21
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0670 - 27128153-27129075,27129152-27129266,27129348-271295...    33   0.092
01_07_0303 + 42615578-42615709,42616273-42616312,42616393-426164...    32   0.21 
07_03_0244 - 15715047-15715163,15716672-15716824,15718629-157187...    27   6.0  
12_02_0529 - 20067974-20068588,20069982-20070048,20070156-200702...    27   8.0  
08_02_0521 - 18135036-18135152,18135662-18135943                       27   8.0  
08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641...    27   8.0  

>04_04_0670 -
           27128153-27129075,27129152-27129266,27129348-27129537,
           27129652-27129786,27129874-27129971,27131075-27131764
          Length = 716

 Score = 33.5 bits (73), Expect = 0.092
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = +1

Query: 274 HRTSVDT*IGLVS-LAFAGSIGMTFV-ILACALPQYKTWWPFFVVLFYVLCP 423
           HR  V T   + S LAF+G +G+TF+ ++A  +  ++  W ++VV+ Y+L P
Sbjct: 420 HRNEVFTTDNIPSWLAFSGYLGLTFIAVIAIPMMFHEMKW-YYVVIAYLLAP 470


>01_07_0303 +
           42615578-42615709,42616273-42616312,42616393-42616477,
           42616634-42616813,42618274-42618354,42618890-42619011,
           42619867-42620723,42621656-42621897,42622107-42622200,
           42622306-42622476,42622695-42622740,42624101-42624111,
           42624141-42624392
          Length = 770

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 355 ACALPQYKTWWPFFVVLFYVLCPI 426
           ACAL  Y  WWP    L YVL P+
Sbjct: 45  ACAL--YNNWWPMLAALMYVLVPM 66


>07_03_0244 -
           15715047-15715163,15716672-15716824,15718629-15718748,
           15718830-15719045,15719902-15719968,15720051-15720125,
           15720607-15720698,15721053-15721154,15721642-15721711,
           15721788-15721846,15721947-15722031,15722443-15722520,
           15722627-15722725,15722819-15722910,15725572-15725661,
           15725937-15725995,15727966-15728281,15728627-15728702,
           15729998-15730308,15730577-15730634,15731082-15731092,
           15731247-15731397,15733372-15733778
          Length = 967

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -3

Query: 119 MIYGIHIPLIPAIIFKYKKVLINIHIQGNKI 27
           +++G+ +P IPA+  +Y ++LI+  I G  +
Sbjct: 510 LVFGVQMPTIPALRKEYGELLISCGIVGEAL 540


>12_02_0529 -
           20067974-20068588,20069982-20070048,20070156-20070264,
           20070357-20070402,20070501-20070636,20070745-20070866,
           20070944-20071306,20071914-20072043,20072129-20072202,
           20072620-20072709,20072836-20072875,20073047-20073117,
           20074248-20074277
          Length = 630

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 7/37 (18%), Positives = 23/37 (62%)
 Frame = -3

Query: 131 HIYSMIYGIHIPLIPAIIFKYKKVLINIHIQGNKIIK 21
           H++  +YG  +  + ++  + K+ +++I +QG + ++
Sbjct: 245 HVHGNVYGTSVEAVESVTDEGKRCILDIDVQGARSVR 281


>08_02_0521 - 18135036-18135152,18135662-18135943
          Length = 132

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 180 IEDSWNHDCNGDPHLISYIFYDIWH--THTFNSS 85
           +E+ W       P  +S++F+D +H  +HT  SS
Sbjct: 93  VEEKWQSKSLNKPMPLSHLFFDFFHHNSHTAKSS 126


>08_01_0722 +
           6412654-6412860,6413142-6413687,6413745-6413877,
           6413917-6414035,6414128-6414883,6415209-6415258,
           6415560-6416679
          Length = 976

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 311 DTRPIHVSTEVR*YMEYKKDILINKK 234
           DTR +H    V  Y  Y KDIL NK+
Sbjct: 326 DTRLLHSVNRVPTYARYLKDILNNKR 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,350,940
Number of Sequences: 37544
Number of extensions: 272287
Number of successful extensions: 594
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)