Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G21
(487 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15) 29 1.5
SB_23992| Best HMM Match : Exo_endo_phos (HMM E-Value=2.6e-12) 29 1.5
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22) 27 6.2
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_16741| Best HMM Match : FYVE (HMM E-Value=7.1) 27 6.2
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0) 27 6.2
SB_6262| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15)
Length = 930
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/63 (22%), Positives = 26/63 (41%)
Frame = +1
Query: 247 SMSFLYSMYHRTSVDT*IGLVSLAFAGSIGMTFVILACALPQYKTWWPFFVVLFYVLCPI 426
S+ +LY + RT +GL I M +++ Y W FF +++ +
Sbjct: 679 SIRYLYDRFSRTQPSR-VGLKCALVTSCISMIMILIIATFAHYLEGWSFFNGIYFGFITL 737
Query: 427 ATM 435
T+
Sbjct: 738 TTI 740
>SB_23992| Best HMM Match : Exo_endo_phos (HMM E-Value=2.6e-12)
Length = 629
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 450 VPACNHCCYGTQYIEKYNKEW-PPC 379
+P CN C G Y+E ++W PPC
Sbjct: 498 IPPCNARCAGQVYVEYNVRKWIPPC 522
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 450 VPACNHCCYGTQYIEKYNKEW-PPC 379
+P CN C G Y+E ++W PPC
Sbjct: 519 IPPCNARCAGQVYVEYNVRKWIPPC 543
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 450 VPACNHCCYGTQYIEKYNKEW-PPC 379
+P CN C G Y+E ++W PPC
Sbjct: 561 IPPCNARCAGQVYVEYNVRKWIPPC 585
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 450 VPACNHCCYGTQYIEKYNKEW-PPC 379
+P C+ C G Y+E ++W PPC
Sbjct: 330 IPPCDARCAGQVYVEYNVRKWIPPC 354
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 450 VPACNHCCYGTQYIEKYNKEW-PPC 379
+P C+ C G Y+E ++W PPC
Sbjct: 351 IPPCDARCAGQVYVEYNVRKWIPPC 375
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 450 VPACNHCCYGTQYIEKYNKEW-PPC 379
+P C+ C G Y+E ++W PPC
Sbjct: 372 IPPCDARCAGQVYVEYNVRKWIPPC 396
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 450 VPACNHCCYGTQYIEKYNKEW-PPC 379
+P C+ C G Y+E ++W PPC
Sbjct: 393 IPPCDARCAGQVYVEYNVRKWIPPC 417
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 450 VPACNHCCYGTQYIEKYNKEW-PPC 379
+P C+ C G Y+E ++W PPC
Sbjct: 414 IPPCDARCAGQVYVEYNVRKWIPPC 438
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 450 VPACNHCCYGTQYIEKYNKEW-PPC 379
+P C+ C G Y+E ++W PPC
Sbjct: 435 IPPCDARCAGQVYVEYNVRKWIPPC 459
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 450 VPACNHCCYGTQYIEKYNKEW-PPC 379
+P C+ C G Y+E ++W PPC
Sbjct: 456 IPPCDARCAGQVYVEYNVRKWIPPC 480
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 450 VPACNHCCYGTQYIEKYNKEW-PPC 379
+P C+ C G Y+E ++W PPC
Sbjct: 477 IPPCDARCAGQVYVEYNVRKWIPPC 501
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 450 VPACNHCCYGTQYIEKYNKEW-PPC 379
+P C+ C G Y+E ++W PPC
Sbjct: 540 IPPCDARCAGQVYVEYNVRKWIPPC 564
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 450 VPACNHCCYGTQYIEKYNKEW-PPC 379
+P C+ C G Y+E ++W PPC
Sbjct: 582 IPPCDARCAGQVYVEYNVRKWIPPC 606
>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
Length = 1421
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 297 NRSSVSGFCWFNWYDICHSSMCLTTI*NMVAIL 395
+R+ VS +CWF +SMC+ + +VA L
Sbjct: 717 HRTLVSWYCWFGRKKTIAASMCVAALAAIVAAL 749
>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 456 ICVPACNHCCYGTQYIEKYNKEWP 385
+ +P C + YGTQY + Y +E P
Sbjct: 43 VALPECFNSPYGTQYFKDYAEEIP 66
>SB_16741| Best HMM Match : FYVE (HMM E-Value=7.1)
Length = 556
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 333 N*TSKSQRH*TYSCVHRGAMIHGI*KRHTYK*EIIIH 223
N TSK R ++ CV GA+ G K H K E+ +H
Sbjct: 334 NTTSKMPRSQSWRCVESGALALGNIKLHITKKELQLH 370
>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
Length = 242
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 456 ICVPACNHCCYGTQYIEKYNKEWP 385
+ +P C + YGTQY + Y +E P
Sbjct: 41 VALPECFNSPYGTQYFKDYAEEIP 64
>SB_6262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 316 AFAGSIGMTFVILACALPQYKTWWPFFVVLFYVLCP 423
+F+GS+ FV L ++P Y+ W VV+ L P
Sbjct: 48 SFSGSVMALFVKLTISMPSYEVVWFRSVVVGVFLLP 83
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,248,418
Number of Sequences: 59808
Number of extensions: 354723
Number of successful extensions: 689
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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