Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G21
         (487 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23450-3|AAN39678.1|  132|Caenorhabditis elegans Hypothetical pr...    76   2e-14
U23450-4|AAN39679.1|  130|Caenorhabditis elegans Hypothetical pr...    69   2e-12
Z81066-1|CAB02970.1|  919|Caenorhabditis elegans Hypothetical pr...    33   0.083
U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z81147-4|CAB03529.1|  578|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine rec...    28   4.1  
Z49068-8|CAA88861.1|  540|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U25697-1|AAA92842.1|  540|Caenorhabditis elegans CCT-4 protein.        27   5.5  
Z81147-5|CAB03534.1|  663|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z81492-4|CAB04031.1|  624|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical p...    27   9.5  
Z81133-3|CAB03443.3|  527|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z74041-7|CAA98518.2|  335|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF022982-5|AAB69936.2|  799|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U23450-3|AAN39678.1|  132|Caenorhabditis elegans Hypothetical
           protein C30B5.2a protein.
          Length = 132

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 32/61 (52%), Positives = 44/61 (72%)
 Frame = +1

Query: 304 LVSLAFAGSIGMTFVILACALPQYKTWWPFFVVLFYVLCPIATMIARRHTDGTAGNNSAC 483
           + +LAFAG +G+TF++L CALP+Y TW P FV+ FYVL P+  +IARR  +   G N AC
Sbjct: 7   VAALAFAGVVGLTFLVLGCALPRYGTWTPMFVITFYVLSPVPLLIARRFQEDMTGTN-AC 65

Query: 484 M 486
           +
Sbjct: 66  I 66


>U23450-4|AAN39679.1|  130|Caenorhabditis elegans Hypothetical
           protein C30B5.2b protein.
          Length = 130

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 31/61 (50%), Positives = 43/61 (70%)
 Frame = +1

Query: 304 LVSLAFAGSIGMTFVILACALPQYKTWWPFFVVLFYVLCPIATMIARRHTDGTAGNNSAC 483
           + +LAFAG +G+TF++L CALP  +TW P FV+ FYVL P+  +IARR  +   G N AC
Sbjct: 7   VAALAFAGVVGLTFLVLGCALP--RTWTPMFVITFYVLSPVPLLIARRFQEDMTGTN-AC 63

Query: 484 M 486
           +
Sbjct: 64  I 64


>Z81066-1|CAB02970.1|  919|Caenorhabditis elegans Hypothetical
           protein F17B5.2 protein.
          Length = 919

 Score = 33.5 bits (73), Expect = 0.083
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
 Frame = +1

Query: 223 MYYYFLFISMSFLYSMYHRTSVDT--*IGLVSLAFAGSIGMT-----FVILACALPQYKT 381
           +Y   + ISM FLY+ +  T+++T     ++SL F  +  MT     F +LA A+  +  
Sbjct: 85  LYLLIILISMIFLYNFFPATAIETNRSSAVMSLLFVSNKPMTIEEDYFEMLAIAVNIFTH 144

Query: 382 WWPFFV-VLFYVLCPIATMIARR 447
            W   V + FY++ P   +I  +
Sbjct: 145 TWSLSVEIQFYLIVPSIYIIGNK 167


>U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical protein
            F59A3.1 protein.
          Length = 1014

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 351  SSMCLTTI*NMVAILCCTFLC 413
            S+M + TI +++ I+CCTF+C
Sbjct: 949  SNMVIITIASILMIICCTFMC 969


>Z81147-4|CAB03529.1|  578|Caenorhabditis elegans Hypothetical
           protein T09E11.5 protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
 Frame = +1

Query: 163 IP*IFYSIYQYCNSDT*CAEMYYYFLFISMSFLYSMYHRTSV--DT*IGLVSLAFAGSIG 336
           IP +F  +Y Y         MY++ +F+++  LY+++  T+V  +    L +L F  +  
Sbjct: 63  IPAVF--LYFYTRRLKRILPMYFFAIFLALIALYTVFSVTTVLQNQYSALRALFFTSNRK 120

Query: 337 MT-----FVILACALPQYKTWWPFFV-VLFYVLCPIATMI 438
            +     F +LA A+  +   W   V V +Y++ P+  MI
Sbjct: 121 KSEDEDYFEMLALAVDIFTHTWSLSVEVQYYLIVPVIFMI 160


>U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 36 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 129 YIFYDIWHTHTFNSSHYI*IQKSTN 55
           YIF+DI+   T N S Y  I+KS N
Sbjct: 76  YIFHDIYFAFTMNWSLYRSIEKSNN 100


>Z49068-8|CAA88861.1|  540|Caenorhabditis elegans Hypothetical
           protein K01C8.10 protein.
          Length = 540

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 374 YCGKAHARMTNVIPIEPAKARDTRPIHVSTEVR 276
           YC +A A    +IP   A+     PIH  TE+R
Sbjct: 449 YCWRAFADALELIPYTLAENAGLSPIHTVTELR 481


>U25697-1|AAA92842.1|  540|Caenorhabditis elegans CCT-4 protein.
          Length = 540

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 374 YCGKAHARMTNVIPIEPAKARDTRPIHVSTEVR 276
           YC +A A    +IP   A+     PIH  TE+R
Sbjct: 449 YCWRAFADALELIPYTLAENAGLSPIHTVTELR 481


>Z81147-5|CAB03534.1|  663|Caenorhabditis elegans Hypothetical
           protein T09E11.7 protein.
          Length = 663

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
 Frame = +1

Query: 223 MYYYFLFISMSFLYSMYHRTSV--DT*IGLVSLAFAGSIGMT-----FVILACALPQYKT 381
           MY++ +F+++  LY+ +  T+V  +    L +L F  +   T     F +L  A+  +  
Sbjct: 81  MYFFAIFLALIALYTAFSVTNVLQNQYSALRALFFTSNRKKTGFEDYFEMLDLAVDIFTH 140

Query: 382 WWPFFV-VLFYVLCPIATMI 438
            W   V V FY++ P+  MI
Sbjct: 141 TWSLSVEVQFYLIVPVVFMI 160


>Z81492-4|CAB04031.1|  624|Caenorhabditis elegans Hypothetical
           protein E03H4.7 protein.
          Length = 624

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
 Frame = +1

Query: 223 MYYYFLFISMSFLYSMYHRTSVD--T*IGLVSLAFAGSIGMT-----FVILACALPQYKT 381
           +Y + + +SM  LYS++  T  +      L +L F  +   +     FV L  A+  +  
Sbjct: 79  LYLFTILLSMISLYSVFPDTIAEFNKNSALGALLFVSNTAKSKEDDYFVQLTKAMDIFTH 138

Query: 382 WWPFFV-VLFYVLCPIATMIARR 447
            W   V V FY L P+  ++A R
Sbjct: 139 TWSLSVEVQFYFLVPVVFLVALR 161


>Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical
           protein T09E11.4 protein.
          Length = 671

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
 Frame = +1

Query: 163 IP*IFYSIYQYCNSDT*CAEMYYYFLFISMSFLYSMYHRTSV--DT*IGLVSLAFAGSIG 336
           IP +F  +Y Y         MY++ +F+++  LY+++  T+V  +    L +L F  +  
Sbjct: 63  IPAVF--LYFYTRRLKRILPMYFFAIFLALIALYTVFSVTTVLQNQYSALRALFFTSNRQ 120

Query: 337 MT-----FVILACALPQYKTWWPFFV-VLFYVLCPIATMI 438
            T     F  L+ A+  +   W   V V FY++ P+  +I
Sbjct: 121 KTGPENYFEKLSLAVDIFTHTWSLSVEVQFYLIVPVIFLI 160


>Z81133-3|CAB03443.3|  527|Caenorhabditis elegans Hypothetical
           protein T28B8.5 protein.
          Length = 527

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 477 RIIASCAICVPACNHCCYGTQYI 409
           +IIASC    PA +H    TQY+
Sbjct: 301 KIIASCGCYYPAYSHASNTTQYV 323


>Z74041-7|CAA98518.2|  335|Caenorhabditis elegans Hypothetical
           protein T03F7.4 protein.
          Length = 335

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 225 VLLFLIYKYVFFIFHVSSHLCGHMNRSSVS 314
           +L+F+  + +FFI H S +LC      +VS
Sbjct: 205 LLIFIFSQTIFFILHSSFYLCKSTTSLAVS 234


>AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical
           protein F37C4.2 protein.
          Length = 686

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
 Frame = +1

Query: 223 MYYYFLFISMSFLYSMYHRTSVDT--*IGLVSLAFAGSIGMT-----FVILACALPQYKT 381
           +Y   + ISM  LY+ +  T+++T     L +L F  +   T     F +L+ A+  +  
Sbjct: 83  LYLLIILISMICLYNFFPDTAIETNKESALHALLFVSNRPKTVAEDYFTMLSIAIDIFTH 142

Query: 382 WWPFFV-VLFYVLCPIATMIARR 447
            W   V + FY L P   +++ +
Sbjct: 143 TWSLSVEIQFYFLVPFIFLLSTK 165


>AF022982-5|AAB69936.2|  799|Caenorhabditis elegans Hypothetical
           protein T23B12.4 protein.
          Length = 799

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +3

Query: 120 RIYMKLDEGPRCSRDSMNLLFNISIL***HLMRRNVLLFLIYKYVFFIFHVSSHLCGHMN 299
           RIY      P+ S+D +N LF  +         +N  +F        +F V +HLCG  N
Sbjct: 392 RIYHLCIVTPKTSKD-LNYLFYFA-----RTFGQNACVFTRSLLQICMFPVDNHLCGDEN 445

Query: 300 RS 305
           RS
Sbjct: 446 RS 447


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,201,037
Number of Sequences: 27780
Number of extensions: 272528
Number of successful extensions: 688
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)