Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G21
         (487 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32410.2 68414.m04000 vacuolar protein sorting 55 family prot...    41   5e-04
At1g32410.1 68414.m03999 vacuolar protein sorting 55 family prot...    41   5e-04
At3g11530.2 68416.m01406 vacuolar protein sorting 55 family prot...    39   0.002
At3g11530.1 68416.m01405 vacuolar protein sorting 55 family prot...    33   0.10 
At5g17270.1 68418.m02023 tetratricopeptide repeat (TPR)-containi...    28   2.9  
At1g76250.1 68414.m08854 expressed protein                             28   2.9  
At1g21940.1 68414.m02745 hypothetical protein                          27   6.7  
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P...    27   8.9  
At1g70430.1 68414.m08103 protein kinase family protein contains ...    27   8.9  
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica...    27   8.9  

>At1g32410.2 68414.m04000 vacuolar protein sorting 55 family protein
           / VPS55 family protein contains Pfam domain PF04133:
           Vacuolar protein sorting 55
          Length = 140

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +1

Query: 271 YHRTSVDT*IGLVS-LAFAGSIGMTFVILACALPQYKTWWPFFVVLFYVLCPI 426
           Y RT +D  +G ++ LA   S G+   ILACAL  +  WWP   V+ YVL P+
Sbjct: 7   YLRTCLD--MGKIAFLAILVSTGIVLQILACAL--FNNWWPMLSVIMYVLLPM 55


>At1g32410.1 68414.m03999 vacuolar protein sorting 55 family protein
           / VPS55 family protein contains Pfam domain PF04133:
           Vacuolar protein sorting 55
          Length = 140

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +1

Query: 271 YHRTSVDT*IGLVS-LAFAGSIGMTFVILACALPQYKTWWPFFVVLFYVLCPI 426
           Y RT +D  +G ++ LA   S G+   ILACAL  +  WWP   V+ YVL P+
Sbjct: 7   YLRTCLD--MGKIAFLAILVSTGIVLQILACAL--FNNWWPMLSVIMYVLLPM 55


>At3g11530.2 68416.m01406 vacuolar protein sorting 55 family protein
           / VPS55 family protein contains Pfam domain PF04133:
           Vacuolar protein sorting 55
          Length = 126

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = +1

Query: 304 LVSLAFAGSIGMTFVILACALPQYKTWWPFFVVLFYVLCPIATM 435
           L  LAF  S  +   ILACA+  Y  WWP    L YV+ P+  M
Sbjct: 8   LAGLAFMFSSSILLQILACAI--YGNWWPMLSALMYVVVPMPCM 49


>At3g11530.1 68416.m01405 vacuolar protein sorting 55 family protein
           / VPS55 family protein contains Pfam domain PF04133:
           Vacuolar protein sorting 55
          Length = 113

 Score = 33.1 bits (72), Expect = 0.10
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 349 ILACALPQYKTWWPFFVVLFYVLCPIATM 435
           ILACA+  Y  WWP    L YV+ P+  M
Sbjct: 10  ILACAI--YGNWWPMLSALMYVVVPMPCM 36


>At5g17270.1 68418.m02023 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 899

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 119 MIYGIHIPLIPAIIFKYKKVLINIHIQGNKI 27
           + Y +H+P IPA+  +Y ++L++  + G  I
Sbjct: 476 LCYAVHLPTIPALRKEYGELLVSCGLVGEAI 506


>At1g76250.1 68414.m08854 expressed protein
          Length = 434

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 468 ASCAICVPACNHCCYGTQYIEKYNKEW 388
           A C  C  ACN  C   + + K NKEW
Sbjct: 329 AKCRPCTVACNGSCV-AEVMGKLNKEW 354


>At1g21940.1 68414.m02745 hypothetical protein
          Length = 183

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 452 VCRRAIIVAMGHNT*KSTTKNGHHVLYCGKAHARMTNV 339
           +C+RA      + T   TTKNGH  LYC     +M ++
Sbjct: 91  ICKRASGFDGSYLT--ETTKNGHVALYCASELNKMADM 126


>At3g18190.1 68416.m02314 chaperonin, putative similar to
           SWISS-PROT:P50991- T-complex protein 1, delta subunit
           (TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 536

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 374 YCGKAHARMTNVIPIEPAKARDTRPIHVSTEVR 276
           YC K+ A    VIP   A+     PI + TE+R
Sbjct: 446 YCVKSFAEALEVIPYTLAENAGLNPIAIVTELR 478


>At1g70430.1 68414.m08103 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 594

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 134 FHIYSMIY--GIHIPLIPAIIFKYKKVLINIHIQGN 33
           FH+   +Y  G+  P+I  ++ +  K L+ +H QG+
Sbjct: 100 FHLMKSVYPEGLEQPIIATLLREVLKALVYLHRQGH 135


>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to SP|P79051 DNA
           repair protein rhp16 (RAD16 homolog)
           {Schizosaccharomyces pombe}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain, PF00097: Zinc finger,
           C3HC4 type (RING finger)
          Length = 833

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 267 HVSSHLCGHMNRSSVSGFCWFNWY 338
           +V+   C H   ++V  FCW+N Y
Sbjct: 426 YVAHQSCPHCPHNAVRHFCWWNKY 449


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,069,686
Number of Sequences: 28952
Number of extensions: 233084
Number of successful extensions: 499
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)