Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G20
(382 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137; Eukar... 87 8e-17
UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13; Eukary... 74 8e-13
UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal ... 73 1e-12
UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13; Magn... 66 2e-10
UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Meta... 61 8e-09
UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;... 58 4e-08
UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN ... 56 3e-07
UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellu... 55 4e-07
UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=... 54 9e-07
UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n... 52 4e-06
UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27; Archa... 52 4e-06
UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila melanogaster|... 51 8e-06
UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiell... 50 2e-05
UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14; Archa... 47 1e-04
UniRef50_Q8SQM2 Cluster: 40S RIBOSOMAL PROTEIN S28; n=1; Encepha... 44 7e-04
UniRef50_P57710 Cluster: 30S ribosomal protein S28e; n=9; Euryar... 44 7e-04
UniRef50_Q5THV0 Cluster: OTTHUMP00000028879; n=1; Homo sapiens|R... 43 0.002
UniRef50_Q7QNK8 Cluster: ENSANGP00000015156; n=1; Anopheles gamb... 35 0.59
UniRef50_UPI00006A05C0 Cluster: Leukemia inhibitory factor recep... 32 4.2
UniRef50_UPI0000F20C0B Cluster: PREDICTED: similar to MGC83845 p... 31 5.5
UniRef50_Q4CQB5 Cluster: Putative uncharacterized protein; n=2; ... 31 5.5
UniRef50_A2AP89 Cluster: Novel protein; n=5; Eutheria|Rep: Novel... 31 7.3
UniRef50_Q9NGK5 Cluster: Neuroligin; n=5; Diptera|Rep: Neuroligi... 31 7.3
UniRef50_A7S7T2 Cluster: Predicted protein; n=2; Nematostella ve... 31 7.3
UniRef50_Q6L058 Cluster: Molybdopterin (MPT) converting factor, ... 31 7.3
>UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137;
Eukaryota|Rep: 40S ribosomal protein S28 - Homo sapiens
(Human)
Length = 69
Score = 87.4 bits (207), Expect = 8e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +3
Query: 45 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 197
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13;
Eukaryota|Rep: 40S ribosomal protein S28 -
Schizosaccharomyces pombe (Fission yeast)
Length = 68
Score = 74.1 bits (174), Expect = 8e-13
Identities = 35/49 (71%), Positives = 42/49 (85%)
Frame = +3
Query: 48 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 194
P LA+V+KVLGRTGS+G TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
>UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal
protein S28; n=2; Catarrhini|Rep: PREDICTED: similar to
ribosomal protein S28 - Pan troglodytes
Length = 356
Score = 73.3 bits (172), Expect = 1e-12
Identities = 34/44 (77%), Positives = 39/44 (88%)
Frame = +3
Query: 45 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPV 176
+P LARV KVLGRTGSQGQCTQV+V+F+ +TSR IIRNVKGPV
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVKFMDDTSRSIIRNVKGPV 50
>UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13;
Magnoliophyta|Rep: 40S ribosomal protein S28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 64
Score = 66.5 bits (155), Expect = 2e-10
Identities = 34/53 (64%), Positives = 42/53 (79%)
Frame = +3
Query: 39 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 197
MD A VVKV+GRTGS+GQ TQV+V+F ++ R I+RNVKGPVR+GDILT
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52
>UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Metazoa
group|Rep: Ribosomal protein S28e - Aspergillus
fumigatus (Sartorya fumigata)
Length = 56
Score = 60.9 bits (141), Expect = 8e-09
Identities = 28/43 (65%), Positives = 35/43 (81%)
Frame = +3
Query: 45 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGP 173
+P L +V +VLGRTGS+G TQV+VEF+ +TSR IIRNVKGP
Sbjct: 6 QPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGP 48
>UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;
n=2; Sordariomycetes|Rep: 40S ribosomal protein S28-like
protein - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 85
Score = 58.4 bits (135), Expect = 4e-08
Identities = 27/43 (62%), Positives = 34/43 (79%)
Frame = +3
Query: 45 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGP 173
+P L +V +VLGRTGS+G TQV+VEF+ + SR IIRNVKGP
Sbjct: 6 QPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDQSRSIIRNVKGP 48
>UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence; n=2;
Mus musculus|Rep: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence - Mus
musculus (Mouse)
Length = 148
Score = 55.6 bits (128), Expect = 3e-07
Identities = 27/43 (62%), Positives = 30/43 (69%)
Frame = -1
Query: 187 SPSRTGPFTFLMI*RLVSPMNSTLT*VHCPCDPVRPSTFTTRA 59
SP RTGP TF M RLVS ++ST T HCPC+PV PST T A
Sbjct: 84 SPFRTGPLTFQMKERLVSFIDSTPTCAHCPCEPVLPSTLVTLA 126
>UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellular
organisms|Rep: 30S ribosomal protein S28e - Methanopyrus
kandleri
Length = 74
Score = 55.2 bits (127), Expect = 4e-07
Identities = 28/47 (59%), Positives = 34/47 (72%), Gaps = 2/47 (4%)
Frame = +3
Query: 60 ARVVKVLGRTGSQGQCTQVKVEFI--GETSRQIIRNVKGPVRDGDIL 194
A VV++LGRTG G+ TQVKV + + R I RNVKGPVR+GDIL
Sbjct: 15 AEVVEILGRTGMAGEVTQVKVRILEGPDKGRIITRNVKGPVREGDIL 61
>UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=1;
Trypanosoma brucei|Rep: 40S ribosomal protein S33,
putative - Trypanosoma brucei
Length = 103
Score = 54.0 bits (124), Expect = 9e-07
Identities = 25/49 (51%), Positives = 36/49 (73%), Gaps = 5/49 (10%)
Frame = +3
Query: 66 VVKVLGRTGSQGQCTQVKVEFIG-----ETSRQIIRNVKGPVRDGDILT 197
++KVLGRTGS+G TQV+V + E +R I+RNVKGP ++GD+L+
Sbjct: 43 IIKVLGRTGSRGNVTQVRVRLMAEEGSPEANRTIVRNVKGPCKEGDMLS 91
>UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n=1;
Gallus gallus|Rep: UPI0000EC9EE1 UniRef100 entry -
Gallus gallus
Length = 112
Score = 52.0 bits (119), Expect = 4e-06
Identities = 26/53 (49%), Positives = 34/53 (64%)
Frame = -3
Query: 233 SKSPGFTLRLEKGQDVSVADRSLHVPDDLTASLSDELHFDLSTLSL*SGAAEH 75
++ P LRLE+G+DVS+ R LHV DD A + ELH LS L L +G A+H
Sbjct: 56 AQPPRLALRLEQGEDVSLPHRPLHVADDGAARVVHELHAHLSALPLGAGPAQH 108
>UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27;
Archaea|Rep: 30S ribosomal protein S28e - Methanococcus
jannaschii
Length = 75
Score = 52.0 bits (119), Expect = 4e-06
Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Frame = +3
Query: 45 KPNVLARVVKVLGRTGSQGQCTQVKVEFIG--ETSRQIIRNVKGPVRDGDIL 194
K V A V++V+GRTG G QV+ + +G +T R ++RNVKGPV+ GDI+
Sbjct: 8 KEAVAAEVIEVIGRTGVTGGIIQVRCKILGGKDTGRVLVRNVKGPVKVGDII 59
>UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila
melanogaster|Rep: IP17744p - Drosophila melanogaster
(Fruit fly)
Length = 73
Score = 50.8 bits (116), Expect = 8e-06
Identities = 21/44 (47%), Positives = 32/44 (72%)
Frame = +3
Query: 60 ARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 191
ARV+K+L R G++G T+V+V+ + + Q +R VKGPVR GD+
Sbjct: 7 ARVIKILNRIGARGILTEVRVQLVDQPKMQFMRTVKGPVRLGDV 50
>UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiella
natans|Rep: Ribosomal protein S28 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 65
Score = 49.6 bits (113), Expect = 2e-05
Identities = 22/43 (51%), Positives = 31/43 (72%)
Frame = +3
Query: 66 VVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 194
V K+L + G +GQ TQV+V+ I + +IRN+KGPVR GDI+
Sbjct: 13 VTKILKKVGKRGQGTQVRVKSITNIKKTLIRNIKGPVRIGDIV 55
>UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14;
Archaea|Rep: 30S ribosomal protein S28e - Sulfolobus
solfataricus
Length = 83
Score = 47.2 bits (107), Expect = 1e-04
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Frame = +3
Query: 60 ARVVKVLGRTGSQGQCTQVKVEFIG--ETSRQIIRNVKGPVRDGDIL 194
A V+++L RTG G+ TQV+V + + R + RNVKGPVR GDIL
Sbjct: 21 AEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRVGDIL 67
>UniRef50_Q8SQM2 Cluster: 40S RIBOSOMAL PROTEIN S28; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S28
- Encephalitozoon cuniculi
Length = 65
Score = 44.4 bits (100), Expect = 7e-04
Identities = 24/51 (47%), Positives = 29/51 (56%)
Frame = +3
Query: 42 DKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 194
++ V VLGRTG G TQVK+E + R I R VKGPV GDI+
Sbjct: 3 EQQEFFGEVTHVLGRTGGSGLLTQVKMELM-HNKRTIQRAVKGPVAVGDII 52
>UniRef50_P57710 Cluster: 30S ribosomal protein S28e; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S28e -
Halobacterium salinarium (Halobacterium halobium)
Length = 74
Score = 44.4 bits (100), Expect = 7e-04
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +3
Query: 60 ARVVKVLGRTGSQGQCTQVK--VEFIGETSRQIIRNVKGPVRDGDIL 194
A V++V+G+TG G+ QVK ++ G R I RNV GPVR GD++
Sbjct: 13 AEVIEVVGKTGMHGEAMQVKCRIQEGGNQGRIITRNVLGPVRVGDVI 59
>UniRef50_Q5THV0 Cluster: OTTHUMP00000028879; n=1; Homo sapiens|Rep:
OTTHUMP00000028879 - Homo sapiens (Human)
Length = 57
Score = 42.7 bits (96), Expect = 0.002
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +3
Query: 48 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 158
P L + KVLGRT SQGQCT+V VEF+ S+++ R
Sbjct: 8 PVKLVKATKVLGRTSSQGQCTRVCVEFMVSQSKRLRR 44
>UniRef50_Q7QNK8 Cluster: ENSANGP00000015156; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000015156 - Anopheles gambiae
str. PEST
Length = 41
Score = 34.7 bits (76), Expect = 0.59
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 86 HRITGTVYSGQSGVHRRD*PSDHQER 163
+RI GTVY G+ GV R PSDH +R
Sbjct: 16 YRIPGTVYPGKGGVPERAKPSDHPQR 41
>UniRef50_UPI00006A05C0 Cluster: Leukemia inhibitory factor receptor
precursor (LIF receptor) (LIF-R) (CD118 antigen).; n=5;
Xenopus tropicalis|Rep: Leukemia inhibitory factor
receptor precursor (LIF receptor) (LIF-R) (CD118
antigen). - Xenopus tropicalis
Length = 990
Score = 31.9 bits (69), Expect = 4.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 285 NLDSWYIMSLNLGYRTFIEVSWLHAPTREGSG 190
NLD W + + +LG RT + V W H P E +G
Sbjct: 415 NLDIWLVNARHLGGRT-VTVYWKHLPINEANG 445
>UniRef50_UPI0000F20C0B Cluster: PREDICTED: similar to MGC83845
protein; n=1; Danio rerio|Rep: PREDICTED: similar to
MGC83845 protein - Danio rerio
Length = 937
Score = 31.5 bits (68), Expect = 5.5
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 73 KCSAAP-DHRDSVLRSKWSSSERLAVRSSGT 162
+C+A P +H D + R WSS++ L++ S GT
Sbjct: 527 ECTAQPTEHTDRIQRPHWSSAQMLSLSSPGT 557
>UniRef50_Q4CQB5 Cluster: Putative uncharacterized protein; n=2;
Trypanosoma cruzi|Rep: Putative uncharacterized protein
- Trypanosoma cruzi
Length = 475
Score = 31.5 bits (68), Expect = 5.5
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 68 RESARPHRITGTVYSGQSGVHRRD*PSDHQEREGTCPRRRHPDP 199
RE +RP R TV++ + G+H R + + C RRRHP P
Sbjct: 261 REGSRPSR---TVHTPRDGIHARK--AHNVSSHPPCRRRRHPPP 299
>UniRef50_A2AP89 Cluster: Novel protein; n=5; Eutheria|Rep: Novel
protein - Mus musculus (Mouse)
Length = 620
Score = 31.1 bits (67), Expect = 7.3
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -3
Query: 188 VSVADRSLHVPDDLTASLSDEL-HFDLSTLSL*SGAAEHF 72
+S D L++P+ L+ S+ + H DLST++L SGA+ F
Sbjct: 480 LSCFDVVLNIPEFLSVSIQEMTKHLDLSTIALRSGASREF 519
>UniRef50_Q9NGK5 Cluster: Neuroligin; n=5; Diptera|Rep: Neuroligin -
Drosophila melanogaster (Fruit fly)
Length = 1248
Score = 31.1 bits (67), Expect = 7.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 100 PCDPVRPSTFTTRARTLGLSILNYISSFEK 11
P P+ P +TT+ R +G +L Y+S+F K
Sbjct: 661 PMSPLFPHNYTTQERQIGRLMLRYLSNFAK 690
>UniRef50_A7S7T2 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 238
Score = 31.1 bits (67), Expect = 7.3
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 66 VVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 197
V+ LG T S T++ V+F+ ET RQ++ K P+ D+ T
Sbjct: 173 VIAALGNTWSHAVNTRLIVQFLDETYRQVM-IAKSPIAPFDVFT 215
>UniRef50_Q6L058 Cluster: Molybdopterin (MPT) converting factor,
subunit 2; n=2; Thermoplasmatales|Rep: Molybdopterin
(MPT) converting factor, subunit 2 - Picrophilus
torridus
Length = 137
Score = 31.1 bits (67), Expect = 7.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 92 SGAAEHFHDTSKNVRLIHFELYIELRE 12
SG F +TS N+R +++E YI++ E
Sbjct: 30 SGTVRSFDETSDNIRALYYEAYIDMAE 56
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 348,070,677
Number of Sequences: 1657284
Number of extensions: 6210450
Number of successful extensions: 13880
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 13619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13870
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14868845845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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