Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G20
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058...    60   6e-10
03_01_0468 - 3612079-3612197,3612679-3612850                           39   0.001
02_01_0006 - 42752-43816                                               28   2.9  

>10_07_0172 +
           13804803-13805293,13805423-13805537,13805766-13805831,
           13805921-13806009,13806103-13806193,13806312-13806458,
           13806575-13806667,13806745-13806846,13806957-13807541,
           13808523-13808813,13808866-13808937
          Length = 713

 Score = 60.1 bits (139), Expect = 6e-10
 Identities = 28/59 (47%), Positives = 39/59 (66%)
 Frame = -3

Query: 233 SKSPGFTLRLEKGQDVSVADRSLHVPDDLTASLSDELHFDLSTLSL*SGAAEHFHDTSK 57
           ++ PG  LRLE+G+DV++ DR+L VP D T  + +ELH DL  L+  +GAA H H   K
Sbjct: 605 AQPPGLPLRLEQGEDVALTDRALDVPHDETVLVVEELHSDLGHLTPGAGAAHHLHHDGK 663


>03_01_0468 - 3612079-3612197,3612679-3612850
          Length = 96

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 19/45 (42%), Positives = 29/45 (64%)
 Frame = -3

Query: 233 SKSPGFTLRLEKGQDVSVADRSLHVPDDLTASLSDELHFDLSTLS 99
           +K PG  L LE+G+DV++++R+L VP D T  +  EL   L  L+
Sbjct: 10  AKPPGLPLGLEQGEDVALSNRALDVPHDETVLVIQELDSHLGHLT 54


>02_01_0006 - 42752-43816
          Length = 354

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 158 EREGTCPRRRHPDPSRVGA*SQETSIKVLYPRLRLIMYQL 277
           ER  T P R  P PS V A + E S ++  PR+R  +  L
Sbjct: 113 ERLSTAPARCFPSPSPVAA-AAEISTEIPQPRVRTTLLYL 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,123,441
Number of Sequences: 37544
Number of extensions: 168619
Number of successful extensions: 337
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)