Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G20
(382 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03850.1 68418.m00356 40S ribosomal protein S28 (RPS28B) ribo... 66 6e-12
At3g10090.1 68416.m01209 40S ribosomal protein S28 (RPS28A) simi... 66 6e-12
At5g64140.1 68418.m08054 40S ribosomal protein S28 (RPS28C) 65 1e-11
At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein / antiterm... 29 1.4
At1g17360.1 68414.m02116 COP1-interacting protein-related simila... 29 1.4
At2g41360.1 68415.m05105 F-box family protein similar to SKP1 in... 27 4.2
At5g31685.1 68418.m03766 expressed protein ; expression supporte... 26 7.4
At5g20910.1 68418.m02483 zinc finger (C3HC4-type RING finger) fa... 26 7.4
At4g35500.2 68417.m05045 protein kinase family protein contains ... 26 7.4
At4g35500.1 68417.m05044 protein kinase family protein contains ... 26 7.4
At1g16330.1 68414.m01954 cyclin family protein similar to SP|P25... 26 7.4
At4g22760.1 68417.m03286 pentatricopeptide (PPR) repeat-containi... 26 9.7
At3g25910.1 68416.m03230 expressed protein 26 9.7
At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi... 26 9.7
>At5g03850.1 68418.m00356 40S ribosomal protein S28 (RPS28B)
ribosomal protein S28, Arabidopsis thaliana,
EMBL:ATRP28A
Length = 64
Score = 66.5 bits (155), Expect = 6e-12
Identities = 34/53 (64%), Positives = 42/53 (79%)
Frame = +3
Query: 39 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 197
MD A VVKV+GRTGS+GQ TQV+V+F ++ R I+RNVKGPVR+GDILT
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52
>At3g10090.1 68416.m01209 40S ribosomal protein S28 (RPS28A) similar
to ribosomal protein S28 GB:P34789 [Arabidopsis
thaliana]
Length = 64
Score = 66.5 bits (155), Expect = 6e-12
Identities = 34/53 (64%), Positives = 42/53 (79%)
Frame = +3
Query: 39 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 197
MD A VVKV+GRTGS+GQ TQV+V+F ++ R I+RNVKGPVR+GDILT
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52
>At5g64140.1 68418.m08054 40S ribosomal protein S28 (RPS28C)
Length = 64
Score = 65.3 bits (152), Expect = 1e-11
Identities = 33/53 (62%), Positives = 42/53 (79%)
Frame = +3
Query: 39 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 197
MD A VVKV+GRTGS+GQ TQV+V+F ++ R I+RNVKGPVR+GD+LT
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRFIMRNVKGPVREGDVLT 52
>At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein /
antitermination NusB domain-containing protein low
similarity to SP|P36929 SUN protein (FMU protein)
{Escherichia coli}; contains Pfam profiles PF01189:
NOL1/NOP2/sun family, PF01029: NusB family
Length = 523
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = -3
Query: 233 SKSPGFTLRLEKGQDVSVAD-----RSLHVPDDLTASLSD 129
+ PGF+LR G+D++ AD SL VP +L+ L +
Sbjct: 251 NNDPGFSLRANTGRDITRADLVERLNSLKVPHELSLHLEE 290
>At1g17360.1 68414.m02116 COP1-interacting protein-related similar
to COP1-Interacting Protein 7 (CIP7) (GI:3327870)
[Arabidopsis thaliana]
Length = 1032
Score = 28.7 bits (61), Expect = 1.4
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +1
Query: 97 RDSVLRSKWSSSERLAVRSSGT*RDLSATETS*PFSSRSVKPGD 228
RD+ LR +WSS E ++S D S TE FS+ S+K D
Sbjct: 563 RDAKLREEWSSKES-KLKSMQEALDQSRTEMKAKFSAASMKRQD 605
>At2g41360.1 68415.m05105 F-box family protein similar to SKP1
interacting partner 6 [Arabidopsis thaliana]
GI:10716957; contains Pfam profile PF00646: F-box domain
Length = 373
Score = 27.1 bits (57), Expect = 4.2
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 242 GPLSKSPGFTLRLEKGQDVSVADRSLHVPDDLTASLSDELHFDLST 105
GP+ P F LR+ V V D +HV DL ++E +DL T
Sbjct: 142 GPIK--PEF-LRIASSSAVGVFDGKIHVIQDLKQDETEEQVYDLET 184
>At5g31685.1 68418.m03766 expressed protein ; expression supported
by MPSS
Length = 519
Score = 26.2 bits (55), Expect = 7.4
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -3
Query: 71 HDTSKNVRLIHFELYIELREIPR 3
++T V L H + Y+E+R +P+
Sbjct: 226 YETESEVTLAHLQNYLEIRRVPK 248
>At5g20910.1 68418.m02483 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 310
Score = 26.2 bits (55), Expect = 7.4
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 206 LEKGQDVSVADRSLHVP-DDLTASLSDELHFDLSTLSL*SGAAEHFHDTSKNVR 48
++ S ++ SL + DDL L+ +L F+ S S+ + +H+ +S ++R
Sbjct: 1 MDASSSPSPSEESLKLELDDLQKQLNKKLRFEASVCSIHNLLRDHYSSSSPSLR 54
>At4g35500.2 68417.m05045 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 439
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 39 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 158
+DK + R++ +G GQ + +EF+G++ ++IR
Sbjct: 95 LDKTKCVVRLIDHFKHSGPNGQHLCMVLEFLGDSLLRLIR 134
>At4g35500.1 68417.m05044 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 438
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 39 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 158
+DK + R++ +G GQ + +EF+G++ ++IR
Sbjct: 94 LDKTKCVVRLIDHFKHSGPNGQHLCMVLEFLGDSLLRLIR 133
>At1g16330.1 68414.m01954 cyclin family protein similar to SP|P25011
G2/mitotic-specific cyclin S13-6 (B-like cyclin)
{Glycine max}; contains Pfam profiles PF00134: Cyclin,
N-terminal domain, PF02984: Cyclin, C-terminal domain
Length = 396
Score = 26.2 bits (55), Expect = 7.4
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 188 VSVADRSLHVPDDLTASLSDELHFDLSTLSL*SGAAEHFHDTSKNVRL-IHFELYI 24
+ VA +LH+ T+ L++ H+++S + S FH +K L + +E YI
Sbjct: 323 IYVARCTLHMTPVWTSLLNNHTHYNVSQMKDCSDMILRFHKAAKTGNLRVTYEKYI 378
>At4g22760.1 68417.m03286 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 889
Score = 25.8 bits (54), Expect = 9.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 143 PSDHQEREGTCPRRRHPDPSRVGA*SQETSIKVLYPRLR 259
PS ++ R+G R P P R +ET V PR+R
Sbjct: 52 PSLNRHRDGQSNHLRRPSPMRGLPMEEETKPIVYLPRIR 90
>At3g25910.1 68416.m03230 expressed protein
Length = 372
Score = 25.8 bits (54), Expect = 9.7
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 68 RESARPHRITGTVYSGQSGVHRRD*PSDHQEREGTCPRRR 187
R S+RP + G Y G +G RD ++ E RR
Sbjct: 315 RRSSRPASLWGESYEGNTGTSPRDEENNQSSDEQVSGTRR 354
>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 867
Score = 25.8 bits (54), Expect = 9.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 230 KSPGFTLRLEKGQDVSVADRSLHVPDDLTASLSDELHFDLSTL 102
+ P F R + +S R LH PD+ + +SD +STL
Sbjct: 11 RPPIFLHRFINPKPISSQTRFLHPPDNQSRDISDSTTETISTL 53
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,435,602
Number of Sequences: 28952
Number of extensions: 134265
Number of successful extensions: 344
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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