Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G19
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   4.3  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   5.6  

>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +3

Query: 153  KIKNYRVIFLIMGSEQSSAAAKKQPLRAPVRRGHTIAVSNIQE 281
            K K Y V+++   ++ ++   +K+ L   +   H I V +++E
Sbjct: 1692 KQKEYEVLYVEKSNDYNTLLLQKEKLMKQIDEFHVIRVQDLEE 1734


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 138 KNNPYKIKNYRVIFLIMGSEQSSAAAKKQPLRAPVRRGHTIAVSNIQEGS 287
           K N    K  R    +  S+Q S A KK+  +  +RR ++   S++  GS
Sbjct: 264 KTNWVYAKGERFAVAVPQSKQVSFATKKELKKDEIRRSYSYGGSSVVFGS 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,367,899
Number of Sequences: 5004
Number of extensions: 21598
Number of successful extensions: 39
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)