Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G19
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1514 - 37892552-37893074,37893291-37893367,37893471-378935...    28   2.4  
08_01_0050 + 350768-351214,352597-352717,352944-353118,353225-35...    28   3.1  
08_02_1138 + 24631919-24632248,24634100-24634502,24634788-246349...    27   5.5  

>01_06_1514 -
           37892552-37893074,37893291-37893367,37893471-37893587,
           37893826-37893926,37895077-37895146,37895318-37895415,
           37896326-37896419,37896792-37896882,37897222-37897547,
           37898193-37898278,37899078-37899417
          Length = 640

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 219 KQPLRAPVRRGHTIAVS 269
           K P+R+P +RGHTI +S
Sbjct: 523 KSPVRSPTQRGHTITLS 539


>08_01_0050 +
           350768-351214,352597-352717,352944-353118,353225-353295,
           353575-354209
          Length = 482

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 341 RTDTGPGRVVTASTRITSRSFLYIRYSYSMTSAHRGSQW 225
           R +  PGR VT S  +TSR  L++ +   +  +    +W
Sbjct: 116 RLEVPPGRWVTGSFNLTSRFTLFLHHGAIILGSQDPEEW 154


>08_02_1138 +
           24631919-24632248,24634100-24634502,24634788-24634982,
           24635384-24635838,24636119-24636349,24636891-24637123,
           24637899-24637971
          Length = 639

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 317 LARGQCLFGFRTALHILHSW 376
           LA G C+  F   +HI+H W
Sbjct: 98  LATGICVAAFNRGVHIIHEW 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,511,492
Number of Sequences: 37544
Number of extensions: 128536
Number of successful extensions: 223
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)