Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G19
         (395 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    27   7.3  
SB_56660| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     26   9.6  
SB_32960| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)              26   9.6  
SB_18447| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)               26   9.6  

>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 138  KNNPYKIKNYRVIFLIMGSEQSSAAAKKQPLRAPVRR 248
            K N Y IK  R+I +I  S+      K++ LR  VRR
Sbjct: 1133 KGNKYYIKRGRIIVMIRPSKGILRVIKRKRLRQFVRR 1169


>SB_56660| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 917

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 277 CILDTAIV*PLRTGALSGCFFAAAEDCSDPMI 182
           C +D +I  P +T   +GC+FA+  D + P++
Sbjct: 765 CSVDISI--PTKTSRNTGCYFASFNDATLPIL 794


>SB_32960| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)
          Length = 991

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 296 CEC*R*QLARGQCLFGFRTALHILHS 373
           C C   Q+   +C +GF+ A+  +HS
Sbjct: 143 CFCQEVQIPEARCFYGFQIAIENIHS 168


>SB_18447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 344 IRTDTGPGRVVTASTRITSRSFLYIRYSYSMTSA 243
           I  DT    ++  S R+T +S+   R SY++T A
Sbjct: 87  IHIDTDSYTMMETSYRLTKKSYTLTRTSYTLTQA 120


>SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)
          Length = 928

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 296 CEC*R*QLARGQCLFGFRTALHILHS 373
           C C   Q+   +C +GF+ A+  +HS
Sbjct: 160 CFCQEVQIPEARCFYGFQIAIENIHS 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,171,775
Number of Sequences: 59808
Number of extensions: 159049
Number of successful extensions: 245
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)