Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G19
         (395 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   1.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   2.9  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   6.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   6.8  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   6.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 120 MFLENSIFVS*NIKLIQRRVTYSEHKLLIQKK*YQARH 7
           +F+   + +   I LI   V Y +H++  QKK   ARH
Sbjct: 826 VFIVVGVGIIGGIGLIIIEVAYKKHQIRKQKKMELARH 863


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 317 LARGQCLFGFRTALHILHS 373
           L RGQC+   R   H +HS
Sbjct: 46  LLRGQCISSRRNGRHNVHS 64


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 138 KNNPYKIKNYRVIFLIMGS 194
           KN+PY +    +I L++GS
Sbjct: 32  KNSPYTVTQAILIALVLGS 50


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 53  LNTNY*YRKNNIRHVTC 3
           L+ NY Y  NN + + C
Sbjct: 85  LSNNYNYNNNNYKKLYC 101


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 53  LNTNY*YRKNNIRHVTC 3
           L+ NY Y  NN + + C
Sbjct: 85  LSNNYNYNNNNYKKLYC 101


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 53  LNTNY*YRKNNIRHVTC 3
           L+ NY Y  NN + + C
Sbjct: 85  LSNNYNYNNNNYKKLYC 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,720
Number of Sequences: 438
Number of extensions: 1664
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)