Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G18
(457 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 171 6e-44
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 166 1e-42
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 165 3e-42
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 29 0.45
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 1.0
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 2.4
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 25 4.2
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 7.3
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 24 9.6
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 24 9.6
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 24 9.6
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 24 9.6
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 171 bits (415), Expect = 6e-44
Identities = 78/126 (61%), Positives = 98/126 (77%)
Frame = +1
Query: 76 KRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRG 255
++++A KKR+ I KRAE Y EYR ER++I L R+AR GNYYVP E KL FVIRIRG
Sbjct: 40 EKKAAQQKKRELIAKRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRG 99
Query: 256 VNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKR 435
+N + PK RK++QL RL QINNGVFV+ NKAT ML++ EPY+ +G PNLK+VREL+YKR
Sbjct: 100 INNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKR 159
Query: 436 GFAKLN 453
GF K+N
Sbjct: 160 GFGKVN 165
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 166 bits (404), Expect = 1e-42
Identities = 75/126 (59%), Positives = 97/126 (76%)
Frame = +1
Query: 76 KRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRG 255
+++SA KKR+ I KRAE Y EYR ER++I LAR+AR GNY+VP E KL FV+RIRG
Sbjct: 39 EKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRG 98
Query: 256 VNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKR 435
+N + PK RK++QL RL QINNG+FV+ NKA ML++ EPY+ +G PN K+VREL+YKR
Sbjct: 99 INNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKR 158
Query: 436 GFAKLN 453
GF K+N
Sbjct: 159 GFGKVN 164
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 165 bits (401), Expect = 3e-42
Identities = 76/128 (59%), Positives = 95/128 (74%)
Frame = +1
Query: 73 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 252
+ ++ A K RKE FKRAE ++ YR +ER+ IRL R A+N+G+ +VP E KL FVIRI
Sbjct: 37 IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIA 96
Query: 253 GVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYK 432
GV + PK+RKVL+L RL +INN VFVR NKA MLRI EPY+ +G PNL SVREL+YK
Sbjct: 97 GVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYK 156
Query: 433 RGFAKLNG 456
RGF K+NG
Sbjct: 157 RGFGKING 164
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 28.7 bits (61), Expect = 0.45
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +1
Query: 91 SIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 204
S+K+ +EI ++ E+ +R+K ++ ++ + A N GN
Sbjct: 152 SLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.5 bits (58), Expect = 1.0
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 187 ARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRL 306
+ N+G YY G +AFV I GV + SP++ LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 2.4
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 121 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 222
+A Q ++ + +RL N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 25.4 bits (53), Expect = 4.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 82 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARN 195
R S K ++E +R +QYV E E+D+I + + ++
Sbjct: 67 RGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKD 104
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 76 KRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 204
KR A ++ K+ +R ++ + E KE++ IRL + +++ N
Sbjct: 121 KRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKEN 163
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 24.2 bits (50), Expect = 9.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 212 CPVKLN*HLSSVFVVSTKYHPRYARYCSCSGCVRSTTAC 328
CP KL + + T+ +P RY SCSG V AC
Sbjct: 258 CP-KLPHLIFKIIEKMTRKNPD-ERYTSCSGIVNDLEAC 294
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 24.2 bits (50), Expect = 9.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 429 VHQLSDTLQVGVAPCNIGL-SDTKHVHCGLVET 334
V ++ + LQVG+ CN GL SD G+ E+
Sbjct: 441 VFRVGEALQVGMVGCNTGLVSDVLSPFGGVKES 473
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 24.2 bits (50), Expect = 9.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 90 SGTPLECDLKTASSECLPPFTVLQ 19
S PLE DL+ +ECL P ++Q
Sbjct: 187 SSDPLE-DLRLTLTECLNPINIVQ 209
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 24.2 bits (50), Expect = 9.6
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -1
Query: 427 TPTLGHSSSWGSPM 386
TPT G+SS+ GSPM
Sbjct: 627 TPTSGNSSTVGSPM 640
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,829,254
Number of Sequences: 5004
Number of extensions: 34044
Number of successful extensions: 112
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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