Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G18
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...   171   3e-43
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...   170   4e-43
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    93   7e-20
02_05_0756 - 31534011-31534141,31534235-31535338,31535448-315356...    31   0.33 
11_01_0049 - 375049-375342,375596-375660,375907-375956,376492-37...    29   2.3  
10_08_0139 + 15145310-15145622,15145820-15145881,15145975-151463...    28   4.1  
07_03_0109 + 13502604-13503059,13503729-13504682                       27   9.5  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score =  171 bits (415), Expect = 3e-43
 Identities = 76/127 (59%), Positives = 102/127 (80%)
 Frame = +1

Query: 73  LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 252
           L  +  +++ RK IF RA+QY +EY  +E++ ++L R+AR +G +YV  EAKL FV+RIR
Sbjct: 34  LAEKKKAVESRKLIFARAKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIR 93

Query: 253 GVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYK 432
           G+N + PK RK+LQL RLRQI NGVF+++NKAT+NMLR  EPY+A+GYPNLKSVREL+YK
Sbjct: 94  GINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYK 153

Query: 433 RGFAKLN 453
           RG+ KLN
Sbjct: 154 RGYGKLN 160


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score =  170 bits (414), Expect = 4e-43
 Identities = 76/124 (61%), Positives = 100/124 (80%)
 Frame = +1

Query: 82  RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 261
           +  SI+ RK IF RA+QY +EY  +E++ ++L R+AR +G +YV  E KL FV+RIRG+N
Sbjct: 36  KKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGIN 95

Query: 262 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 441
            + PK RK+LQL RLRQI NGVF+++NKAT+NMLR  EPY+A+GYPNLKSVREL+YKRG+
Sbjct: 96  AMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGY 155

Query: 442 AKLN 453
            KLN
Sbjct: 156 GKLN 159


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score = 93.5 bits (222), Expect = 7e-20
 Identities = 48/128 (37%), Positives = 81/128 (63%), Gaps = 7/128 (5%)
 Frame = +1

Query: 76  KRRSASIKKRKE----IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE---AKLA 234
           +R++A  ++R++      KR E +V+E+R KE D +R+  + + R     P E   +KL 
Sbjct: 32  ERKAAKRQRRRDDGKGAIKRPEDFVREFRNKELDFVRMKTRLKVRK--LPPAETLNSKLV 89

Query: 235 FVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSV 414
           F IRI G   + P +R++L+  RL Q+  GVF++   AT+  L + EP+I +G+PNLK+V
Sbjct: 90  FAIRIPGTMDLHPHMRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNV 149

Query: 415 RELVYKRG 438
           ++L+YK+G
Sbjct: 150 KDLIYKKG 157


>02_05_0756 -
           31534011-31534141,31534235-31535338,31535448-31535692,
           31535789-31535940,31536051-31536158
          Length = 579

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -2

Query: 258 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 103
           D TN  +KC     G+   A++ ++S QS  I +LDA ++    G  ++ FP
Sbjct: 382 DPTNMAEKCKEGPQGNRFAASLNNVSFQSPAIDVLDAYYYSSGHGVYEEDFP 433


>11_01_0049 -
           375049-375342,375596-375660,375907-375956,376492-376541
          Length = 152

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 98  RRGKKSLREPNNMSKNTASRSVMKSDWQDRLVTVA 202
           R+G KS+  P N  K+   R +M S+ +  L TVA
Sbjct: 108 RKGTKSIDHPCNTIKSMGDRGLMSSESRRMLYTVA 142


>10_08_0139 +
           15145310-15145622,15145820-15145881,15145975-15146355,
           15146413-15146929,15147031-15147161
          Length = 467

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -2

Query: 258 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 103
           DTTN  +K      G+   A++ ++S +S  I +LDA ++    G  ++ FP
Sbjct: 269 DTTNATNKLCKGPQGNQFAASLNNVSFESPAIDVLDAYYYGSGRGVYEEDFP 320


>07_03_0109 + 13502604-13503059,13503729-13504682
          Length = 469

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 67  SEDGELGVPPSFYGASRLIPLV 2
           S + E  VPP +YG + L P+V
Sbjct: 317 SREEEAAVPPGYYGNAHLSPMV 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,210,918
Number of Sequences: 37544
Number of extensions: 228997
Number of successful extensions: 668
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)