Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G18
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      197   3e-51
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_19021| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    28   4.2  
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.6  
SB_58727| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_41944| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       27   7.4  
SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_24942| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_34887| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.95)          27   9.7  
SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)                    27   9.7  
SB_45619| Best HMM Match : M (HMM E-Value=0.01)                        27   9.7  
SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057)               27   9.7  
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)                        27   9.7  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  197 bits (481), Expect = 3e-51
 Identities = 91/118 (77%), Positives = 106/118 (89%)
 Frame = +1

Query: 100 KRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKV 279
           KRKEIFKRAE+YVKEYR KE DE+R+ + A+  GN+YVP EA+LAFVIRIRG+N VSPKV
Sbjct: 43  KRKEIFKRAEKYVKEYRQKEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKV 102

Query: 280 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLN 453
           RK+LQL RLRQINNGVFVRLNKAT NMLRI +PYIA+GYPNLKSVREL+YKRG+ K++
Sbjct: 103 RKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVD 160


>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 82  RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 207
           R   + +R+EI++R E Y +    + R+  RL    R R  Y
Sbjct: 27  RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68


>SB_19021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 590

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 236 LSSVFVVSTKYHPRYARYCSCSGCVRS 316
           L S+FV +T    RY  YC+C G + S
Sbjct: 286 LGSIFVWATGNGGRYNDYCNCDGYITS 312


>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1981

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 172  RLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRK 285
            RL R  + R NYY+  +  +AF + I  V +  P  R+
Sbjct: 1886 RLRRTEKRRQNYYIATQKLMAFALNIYEVLKDDPLTRR 1923


>SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +1

Query: 85  SASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQAR 192
           S   +KRK +FK  ++  K+ ++++ D  +++ Q +
Sbjct: 802 STETRKRKHVFKSGDRTAKKRKLEDNDHEKISTQVK 837


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 154 KERDEIRLARQARNRGNYYVP 216
           K RD   +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503


>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 82  RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 207
           R  +I +R+E+++R E Y +    + R+  R     R R  Y
Sbjct: 16  RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57


>SB_58727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 201 ATVTSLSCQSDF-ITLLDAVFFDILFGSLKD 112
           ATV+  S +  F  T L  V+FD  F SLKD
Sbjct: 6   ATVSGRSMRLSFGATALSGVWFDFYFSSLKD 36


>SB_41944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -3

Query: 287 TLRTLGDTWLTPRIRMTNASLASPGT**LPRLRACLANLISSRSLMRYSLTYCS 126
           TL +L D  + PR+ +   SL  PG   +PRL   L +L     + R  L   S
Sbjct: 467 TLLSLTDPGVIPRLLLALLSLTDPGV--IPRLLLALLSLTHPEVIPRLLLALLS 518


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 97   KKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 231
            KK KE+  +  Q   ++ + + D  RLA + R R    +P + ++
Sbjct: 967  KKAKELVSKQRQISTKFELMDNDLYRLAEKLRERKRLGLPEQEEV 1011


>SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +1

Query: 73   LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 231
            ++R     ++R+E  +R  +  +E R++  DE+R  R+  +RG   +  E +L
Sbjct: 1148 MRREEKDARRREEEERRLRE--EEDRLRREDELRRKREDDDRGRRKLAEERRL 1198


>SB_24942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +2

Query: 179 QDRLVTVAIIMCPVKLN*HLSSVFVVSTKYHPRYARYCSCSGCVRSTTACSFVSTRPQ*T 358
           QDRL    I+  P  +    + +F  S K  PR A  CS +  + S T  +  +T  +  
Sbjct: 8   QDRLAGRRIVAQPSAI---AAFLFATSFKGEPRAAAKCSLNRLLTSWTEGTRHTTLSETF 64

Query: 359 CFVSLSPI-LHGATPT 403
            F  LS    HGA P+
Sbjct: 65  AFARLSRFHQHGAYPS 80


>SB_34887| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.95)
          Length = 439

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +1

Query: 106 KEIFKRAEQYVKEY--RIKERDEIRLARQARNRG 201
           K++    +++ K+Y  ++ + D ++LAR  RNRG
Sbjct: 112 KQLDANLKEFFKKYPRKVLQNDGLKLARHLRNRG 145


>SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 103 RKEIFKRAEQYVKEYRIKERDEIRLARQAR 192
           +KE  KR E+  KE R KER E    R++R
Sbjct: 701 KKENMKRQEKEEKEKRAKERAEKEKERKSR 730


>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
          Length = 591

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 76  KRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNR 198
           ++R    +KRKE   R  +  +E RIKE +E RL  + R++
Sbjct: 419 EKRKLEEQKRKEEEDRRRKEAEEKRIKE-EEARLKEERRSK 458


>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
          Length = 1315

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 91  SIKKRKEIFKRAEQYVKEYRIKERDEIRLARQAR 192
           S KKR E+  +A   +KEYR+K +   R A Q +
Sbjct: 361 SEKKRNELKNKALSSLKEYRVKCKKLEREAEQGK 394


>SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057)
          Length = 976

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 88  ASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNR 198
           A  + R E  ++  + V+E R+KE+D IR A +   R
Sbjct: 272 AVAEARSEQEEKFREVVEEMRVKEQDRIRQAVETERR 308


>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 640

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 423 QLSDTLQVGVAPCNIGLSDTKHVHCGLVETNEHAVVDLTQ 304
           ++ D L V VAP ++G+     V   L+E N       TQ
Sbjct: 388 EVKDVLLVDVAPLSLGIETAGEVMTKLIERNARIPTKATQ 427


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,211,036
Number of Sequences: 59808
Number of extensions: 274603
Number of successful extensions: 903
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)