Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G18
(457 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 173 5e-44
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 173 5e-44
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 171 1e-43
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 171 1e-43
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 171 1e-43
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 167 4e-42
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 95 2e-20
At1g31820.1 68414.m03908 amino acid permease family protein weak... 31 0.49
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 29 1.1
At3g52860.1 68416.m05825 expressed protein 29 1.5
At5g45310.1 68418.m05562 expressed protein 28 2.6
At3g54690.1 68416.m06051 sugar isomerase (SIS) domain-containing... 28 3.4
At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04... 27 4.5
At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putat... 27 6.0
At3g09120.1 68416.m01073 hypothetical protein contains Pfam prof... 27 6.0
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 27 6.0
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta... 27 7.9
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 173 bits (421), Expect = 5e-44
Identities = 78/124 (62%), Positives = 100/124 (80%)
Frame = +1
Query: 82 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 261
+ S++ RK IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRG+N
Sbjct: 39 KKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGIN 98
Query: 262 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 441
+ PK +K+LQL RLRQI NGVF+++NKATVNMLR EPY+ +GYPNLKSV+EL+YKRG+
Sbjct: 99 AIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGY 158
Query: 442 AKLN 453
KLN
Sbjct: 159 GKLN 162
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 173 bits (421), Expect = 5e-44
Identities = 78/124 (62%), Positives = 100/124 (80%)
Frame = +1
Query: 82 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 261
+ S++ RK IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRG+N
Sbjct: 34 KKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGIN 93
Query: 262 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 441
+ PK +K+LQL RLRQI NGVF+++NKATVNMLR EPY+ +GYPNLKSV+EL+YKRG+
Sbjct: 94 AIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGY 153
Query: 442 AKLN 453
KLN
Sbjct: 154 GKLN 157
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 171 bits (417), Expect = 1e-43
Identities = 77/124 (62%), Positives = 101/124 (81%)
Frame = +1
Query: 82 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 261
+ + +KRK IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRG+N
Sbjct: 36 KKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGIN 95
Query: 262 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 441
+ PK +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF
Sbjct: 96 AIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGF 155
Query: 442 AKLN 453
KLN
Sbjct: 156 GKLN 159
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 171 bits (417), Expect = 1e-43
Identities = 77/124 (62%), Positives = 101/124 (81%)
Frame = +1
Query: 82 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 261
+ + +KRK IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRG+N
Sbjct: 36 KKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGIN 95
Query: 262 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 441
+ PK +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF
Sbjct: 96 AIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGF 155
Query: 442 AKLN 453
KLN
Sbjct: 156 GKLN 159
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 171 bits (417), Expect = 1e-43
Identities = 77/124 (62%), Positives = 101/124 (81%)
Frame = +1
Query: 82 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 261
+ + +KRK IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRG+N
Sbjct: 36 KKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGIN 95
Query: 262 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 441
+ PK +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF
Sbjct: 96 AIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGF 155
Query: 442 AKLN 453
KLN
Sbjct: 156 GKLN 159
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 167 bits (405), Expect = 4e-42
Identities = 75/124 (60%), Positives = 99/124 (79%)
Frame = +1
Query: 82 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 261
+ + + RK IFKRAEQY KEY KE++ I L R+A+ +G +YV EAKL F+IRIRG+N
Sbjct: 34 KKKNAENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGIN 93
Query: 262 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 441
+ PK +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +G+PNLKSV+EL+YKRG+
Sbjct: 94 AIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGY 153
Query: 442 AKLN 453
KLN
Sbjct: 154 GKLN 157
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 95.5 bits (227), Expect = 2e-20
Identities = 44/122 (36%), Positives = 75/122 (61%), Gaps = 2/122 (1%)
Frame = +1
Query: 97 KKRKEI--FKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVS 270
KK+K++ KR E +V E+R KE D IR+ ++ + + P ++ L F+IRI+G N +
Sbjct: 41 KKKKKVSDIKRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMH 100
Query: 271 PKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKL 450
PK +++L +L+ + GVF + + L +PY+ +GYPN KSV++L+YK+G +
Sbjct: 101 PKTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTII 160
Query: 451 NG 456
G
Sbjct: 161 EG 162
>At1g31820.1 68414.m03908 amino acid permease family protein weak
similarity to asc-type amino acid transporter 2 [Mus
musculus] GI:18148438; contains Pfam profile PF00324:
Amino acid permease
Length = 482
Score = 30.7 bits (66), Expect = 0.49
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -2
Query: 162 TLLDAVFFDILFGSLKDFFPLLNGSGT-PLECDLKT 58
TL A+ + ++F +L +F PLL+G+G PL+ +L T
Sbjct: 245 TLPKALCYGVIFVALSNFLPLLSGTGAIPLDRELWT 280
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 272 GDTWLTPRIRMTNASLASPGT 210
G TW+ P I +N S+ SPGT
Sbjct: 138 GGTWIQPEIEESNKSMFSPGT 158
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 73 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 171
LK + IKK +F+ +++ VKE K RDE+
Sbjct: 121 LKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
>At5g45310.1 68418.m05562 expressed protein
Length = 352
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 103 RKEIFKRAEQYVKEYRIKERD 165
RKEI K + +KEYRI E+D
Sbjct: 107 RKEIEKNLREAIKEYRIMEQD 127
>At3g54690.1 68416.m06051 sugar isomerase (SIS) domain-containing
protein / CBS domain-containing protein similar to
SP|Q47334 Polysialic acid capsule expression protein
kpsF {Escherichia coli}; contains Pfam profiles PF01380:
sugar isomerase (SIS) domain, PF00571: CBS domain
Length = 350
Score = 27.9 bits (59), Expect = 3.4
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -2
Query: 225 SFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFPLLNGSGTPLE 73
+F + + T+ SLS +S F++ LDA+ DI S +D + SG E
Sbjct: 80 AFVANKVSQTLVSLSFRSSFLSPLDALHGDIGALSPRDVLVFFSKSGATEE 130
>At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577)); common family
comprised of At5g37410, At5g37400, At5g37920,
At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
Length = 579
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 106 KEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRK 285
KEI ++ + V E IK +D + R+ +RG Y V++I Q+ + R+
Sbjct: 295 KEIVRKIKMLVTEPEIKPQDGFKYRREEFDRGWYDCLKSLSSLEVLKIFAFTQLEDRSRE 354
Query: 286 V 288
+
Sbjct: 355 I 355
>At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putative
/ citrate hydro-lyase/aconitase, putative strong
similarity to SP|P49608 Aconitate hydratase, cytoplasmic
(EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)
{Cucurbita maxima}; contains Pfam profiles PF00330:
Aconitase family (aconitate hydratase), PF00694:
Aconitase C-terminal domain
Length = 995
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = -1
Query: 436 RVCTPTL--GHSSSWGSPMQYRAQ 371
RVC+ + H SWGSP RAQ
Sbjct: 57 RVCSASTRWSHGGSWGSPASLRAQ 80
>At3g09120.1 68416.m01073 hypothetical protein contains Pfam profile
PF05056: Protein of unknown function (DUF674)
Length = 333
Score = 27.1 bits (57), Expect = 6.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 195 VTSLSCQSDFITLLDAVFFDILFGSLKDFFPLLNGSGTPLECDLK 61
V +SC+S FI D ++ S+ + +LNG G P DLK
Sbjct: 137 VVFVSCRSSFILTDD---LKVMLNSIDEIVKVLNGLGYPNINDLK 178
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 27.1 bits (57), Expect = 6.0
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 76 KRRSASIKKRKEIFKRAEQYVK----EYRIKERDEI-RLARQARNR 198
KRR +KR+E KR E+ K E + KER+E+ R R+ + R
Sbjct: 556 KRREEEARKREEERKREEEMAKRREQERQRKEREEVERKIREEQER 601
>At4g28470.1 68417.m04073 26S proteasome regulatory subunit, putative
contains Pfam domain PF01851: Proteasome/cyclosome repeat
Length = 1103
Score = 26.6 bits (56), Expect = 7.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 451 SVWRNRVCTPTLGHSSSW 398
+++RN +CT + HS SW
Sbjct: 1078 AIYRNFLCTTLISHSKSW 1095
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,698,735
Number of Sequences: 28952
Number of extensions: 181441
Number of successful extensions: 483
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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