Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G17
         (458 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    23   1.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   3.2  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   5.5  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   5.5  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       20   9.6  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    20   9.6  

>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 267 ASQKVFGERDWIGEIRHFVRLC 202
           AS+KV  E+ WI     + RLC
Sbjct: 254 ASEKVTSEKSWIALNDDYNRLC 275


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 202 WSSLGGYLRTRKDFGTHGMEKPRKTNP 122
           W S  G+ R+   FG   +  P + NP
Sbjct: 177 WHSHSGFQRSDGTFGPFIVRVPEEDNP 203


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 356 SPRTNATRVSSTPSSAFPRSRVCSHSGVV 442
           S  T   + + TP S      VC+  G+V
Sbjct: 421 SSTTQKPQTTKTPESGNESDGVCTKEGIV 449


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -2

Query: 145 EKPRKTNPRFLIRRFGVIS*SQEHRGRCVPFLKFDRSRSLAVLHGG 8
           + P  + P F  +R GVIS       + V   +   + +   +HGG
Sbjct: 8   DTPTSSAPAFSEQRGGVISEGVASSLQVVALFQLSETTAPRSIHGG 53


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 179 QVSTQRGPHNRTKCRISPIQSRSP 250
           QV   R PH   +  +S I  R P
Sbjct: 24  QVMEPRSPHTAWQFGVSQIVKREP 47



 Score = 20.2 bits (40), Expect = 9.6
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 445 KYHARMRADPAPWECGR 395
           +YH R  A   P++C +
Sbjct: 247 EYHLRNHAGSKPFQCNK 263


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 445 KYHARMRADPAPWECGR 395
           +YH R  A   P++C +
Sbjct: 5   EYHLRNHAGSKPFQCNK 21


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,901
Number of Sequences: 336
Number of extensions: 2495
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)