Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G17
         (458 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   138   4e-35
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   138   4e-35
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   4.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   4.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  138 bits (333), Expect = 4e-35
 Identities = 62/75 (82%), Positives = 71/75 (94%)
 Frame = +1

Query: 217 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAF 396
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 397 VRIPKEQGLLSFWRG 441
           VRIPKEQG LS+WRG
Sbjct: 61  VRIPKEQGFLSYWRG 75


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  138 bits (333), Expect = 4e-35
 Identities = 62/75 (82%), Positives = 71/75 (94%)
 Frame = +1

Query: 217 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAF 396
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 397 VRIPKEQGLLSFWRG 441
           VRIPKEQG LS+WRG
Sbjct: 61  VRIPKEQGFLSYWRG 75


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 359 AICLLTCWT 333
           A C+L+CWT
Sbjct: 103 ATCVLSCWT 111


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 359 AICLLTCWT 333
           A C+L+CWT
Sbjct: 156 ATCVLSCWT 164


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 84  DHEITPNLLIKNRGFVFRGFSIPCVPKSFLVRKYPP 191
           D  ++P   I+NR  +  G S P   +     K+PP
Sbjct: 374 DLRMSPLPSIRNRSGLVSGSSTPGTGREHDPAKFPP 409


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -2

Query: 157 THGMEKPRKTNPRFLIRRFGVIS 89
           THG   P       LIR  G +S
Sbjct: 55  THGKGTPTVVKTNILIRSMGPVS 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,096
Number of Sequences: 438
Number of extensions: 2999
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)