Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G16
(262 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI00015B5755 Cluster: PREDICTED: similar to cleavage a... 78 3e-14
UniRef50_Q5FVR7 Cluster: Cleavage and polyadenylation specificit... 77 8e-14
UniRef50_Q8BQZ5 Cluster: Cleavage and polyadenylation specificit... 77 8e-14
UniRef50_O95639 Cluster: Cleavage and polyadenylation specificit... 77 8e-14
UniRef50_Q9I904 Cluster: No arches; n=8; Eumetazoa|Rep: No arche... 74 7e-13
UniRef50_Q4SVP0 Cluster: Chromosome undetermined SCAF13749, whol... 72 2e-12
UniRef50_A0JQ42 Cluster: IP02511p; n=7; Endopterygota|Rep: IP025... 55 3e-07
UniRef50_A0DNP4 Cluster: Chromosome undetermined scaffold_58, wh... 33 0.95
UniRef50_UPI0000E812D0 Cluster: PREDICTED: similar to no arches;... 32 2.2
UniRef50_Q235W6 Cluster: Putative uncharacterized protein; n=1; ... 31 5.1
UniRef50_P78025 Cluster: ATP-dependent protease La; n=6; Mycopla... 31 5.1
UniRef50_Q55FB1 Cluster: Putative uncharacterized protein; n=1; ... 31 6.7
UniRef50_A0C4S7 Cluster: Chromosome undetermined scaffold_15, wh... 31 6.7
UniRef50_Q57UP8 Cluster: Fatty acid elongase, putative; n=3; Try... 30 8.9
>UniRef50_UPI00015B5755 Cluster: PREDICTED: similar to cleavage and
polyadenylation specific factor 4; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to cleavage and
polyadenylation specific factor 4 - Nasonia vitripennis
Length = 216
Score = 78.2 bits (184), Expect = 3e-14
Identities = 37/63 (58%), Positives = 46/63 (73%)
Frame = +2
Query: 74 MEVIVASVDHIKFDIDFALEEQYGALPLPFPGMDKSTAAVCEFFSXXXXXXXXXXXXYRH 253
ME IVA+VD+++FDI+ AL+EQYGALPLPF GMDKS AAVC+F+ +RH
Sbjct: 1 MECIVANVDNMRFDIEIALDEQYGALPLPFTGMDKSVAAVCQFY-PKGTCTKGAACPFRH 59
Query: 254 VRG 262
VRG
Sbjct: 60 VRG 62
>UniRef50_Q5FVR7 Cluster: Cleavage and polyadenylation specificity
factor subunit 4; n=25; Amniota|Rep: Cleavage and
polyadenylation specificity factor subunit 4 - Rattus
norvegicus (Rat)
Length = 243
Score = 77.0 bits (181), Expect = 8e-14
Identities = 36/63 (57%), Positives = 44/63 (69%)
Frame = +2
Query: 74 MEVIVASVDHIKFDIDFALEEQYGALPLPFPGMDKSTAAVCEFFSXXXXXXXXXXXXYRH 253
M+ I+ASVDHIKFD++ A+E+Q GA PLPFPGMDKS AAVCEFF +RH
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFF-LKAACGKGGMCPFRH 59
Query: 254 VRG 262
+ G
Sbjct: 60 ISG 62
>UniRef50_Q8BQZ5 Cluster: Cleavage and polyadenylation specificity
factor subunit 4; n=6; Theria|Rep: Cleavage and
polyadenylation specificity factor subunit 4 - Mus
musculus (Mouse)
Length = 211
Score = 77.0 bits (181), Expect = 8e-14
Identities = 36/63 (57%), Positives = 44/63 (69%)
Frame = +2
Query: 74 MEVIVASVDHIKFDIDFALEEQYGALPLPFPGMDKSTAAVCEFFSXXXXXXXXXXXXYRH 253
M+ I+ASVDHIKFD++ A+E+Q GA PLPFPGMDKS AAVCEFF +RH
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFF-LKAACGKGGMCPFRH 59
Query: 254 VRG 262
+ G
Sbjct: 60 ISG 62
>UniRef50_O95639 Cluster: Cleavage and polyadenylation specificity
factor subunit 4; n=13; Euteleostomi|Rep: Cleavage and
polyadenylation specificity factor subunit 4 - Homo
sapiens (Human)
Length = 269
Score = 77.0 bits (181), Expect = 8e-14
Identities = 36/63 (57%), Positives = 44/63 (69%)
Frame = +2
Query: 74 MEVIVASVDHIKFDIDFALEEQYGALPLPFPGMDKSTAAVCEFFSXXXXXXXXXXXXYRH 253
M+ I+ASVDHIKFD++ A+E+Q GA PLPFPGMDKS AAVCEFF +RH
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFF-LKAACGKGGMCPFRH 59
Query: 254 VRG 262
+ G
Sbjct: 60 ISG 62
>UniRef50_Q9I904 Cluster: No arches; n=8; Eumetazoa|Rep: No arches -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 190
Score = 73.7 bits (173), Expect = 7e-13
Identities = 33/63 (52%), Positives = 44/63 (69%)
Frame = +2
Query: 74 MEVIVASVDHIKFDIDFALEEQYGALPLPFPGMDKSTAAVCEFFSXXXXXXXXXXXXYRH 253
M+ ++A+VDHIKFD++ A+E+Q GA PLPFPGMDKS AAVCE+F +RH
Sbjct: 1 MQELIATVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEYF-MRAACMKGGMCPFRH 59
Query: 254 VRG 262
+ G
Sbjct: 60 ISG 62
>UniRef50_Q4SVP0 Cluster: Chromosome undetermined SCAF13749, whole
genome shotgun sequence; n=10; Euteleostomi|Rep:
Chromosome undetermined SCAF13749, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 291
Score = 72.1 bits (169), Expect = 2e-12
Identities = 33/63 (52%), Positives = 44/63 (69%)
Frame = +2
Query: 74 MEVIVASVDHIKFDIDFALEEQYGALPLPFPGMDKSTAAVCEFFSXXXXXXXXXXXXYRH 253
M+ I+A+VDHIKFD++ A+++Q GA PLPFPGMDKS +AVCEFF +RH
Sbjct: 1 MQDILANVDHIKFDLEIAVQQQLGAQPLPFPGMDKSGSAVCEFF-MRAACMKGAMCPFRH 59
Query: 254 VRG 262
+ G
Sbjct: 60 ISG 62
>UniRef50_A0JQ42 Cluster: IP02511p; n=7; Endopterygota|Rep: IP02511p
- Drosophila melanogaster (Fruit fly)
Length = 320
Score = 55.2 bits (127), Expect = 3e-07
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +2
Query: 74 MEVIVASVDHIKFDIDFALEEQYGALPLPFPGMDKSTAAVCEFFS-XXXXXXXXXXXXYR 250
M++++A+V ++F + L EQ GA+PLPF GMDKS AAVC F + +R
Sbjct: 25 MDILLANVSGLQFKAERDLIEQVGAIPLPFYGMDKSIAAVCNFITRNGQECDKGSACPFR 84
Query: 251 HVRG 262
H+RG
Sbjct: 85 HIRG 88
>UniRef50_A0DNP4 Cluster: Chromosome undetermined scaffold_58, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_58,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1334
Score = 33.5 bits (73), Expect = 0.95
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -1
Query: 136 FF*SKIYIEFYVIHTGHDNF-HIYNLIRILNKNKHKSFEKVSEPLV 2
+F S++Y EF + T H+ F + YN+ ++ N+ KV +PL+
Sbjct: 540 YFSSQVYFEFNLSSTQHEMFQNNYNVYIVIKNNEQLDIWKVQDPLI 585
>UniRef50_UPI0000E812D0 Cluster: PREDICTED: similar to no arches;
n=2; Gallus gallus|Rep: PREDICTED: similar to no arches
- Gallus gallus
Length = 193
Score = 32.3 bits (70), Expect = 2.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 74 MEVIVASVDHIKFDIDFALEEQYGALPLPFPGMDKSTAAVC 196
ME +VA V+ I FD++ +E+Q LPFP S C
Sbjct: 1 MEELVAGVERIGFDVEADVEQQQEVQLLPFPDECSSEDCPC 41
>UniRef50_Q235W6 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 522
Score = 31.1 bits (67), Expect = 5.1
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -1
Query: 118 YIEFYVIHTGHDNF-HIYNLIRILNKNKHKSFEKVSEPLV 2
Y++F V++ H F +Y+ ++++NKN H+ +E LV
Sbjct: 250 YLKFLVLNKNHMKFLQVYDQVKLINKNHHRVALAYAEYLV 289
>UniRef50_P78025 Cluster: ATP-dependent protease La; n=6;
Mycoplasma|Rep: ATP-dependent protease La - Mycoplasma
pneumoniae
Length = 795
Score = 31.1 bits (67), Expect = 5.1
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -1
Query: 85 DNFHIYNLIRILNKNKHKSFEKVSEPLV 2
DN + NLI+ILNKN H +KV E +V
Sbjct: 332 DNADVKNLIKILNKN-HSGLDKVKERVV 358
>UniRef50_Q55FB1 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1504
Score = 30.7 bits (66), Expect = 6.7
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Frame = -1
Query: 100 IHTGHDNFHI----YNLIRILNKNKHKSFEK 20
IHT +N+HI +LI ILNKNK+K+ K
Sbjct: 1233 IHTEDNNYHIPPIKLDLIEILNKNKNKNNNK 1263
>UniRef50_A0C4S7 Cluster: Chromosome undetermined scaffold_15,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_15,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 806
Score = 30.7 bits (66), Expect = 6.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 79 FHIYNLIRILNKNKHKSFEKVSEPLV 2
+H+Y+ I++L NK+K F K S LV
Sbjct: 10 YHLYDTIQLLKNNKYKKFIKQSRKLV 35
>UniRef50_Q57UP8 Cluster: Fatty acid elongase, putative; n=3;
Trypanosoma|Rep: Fatty acid elongase, putative -
Trypanosoma brucei
Length = 305
Score = 30.3 bits (65), Expect = 8.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 150 YHYLSLEWTNXXXXCVNSSVSLEVVAMALSVHTDMYV 260
YH++++ + CV SS + V AM SVH+ MY+
Sbjct: 162 YHHVTVLLFSWHTYCVGSSAYIWVAAMNYSVHSVMYL 198
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,632,726
Number of Sequences: 1657284
Number of extensions: 4205110
Number of successful extensions: 10720
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10718
length of database: 575,637,011
effective HSP length: 64
effective length of database: 469,570,835
effective search space used: 10330558370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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