Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G16
         (262 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    26   0.72 
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    25   1.7  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    23   5.1  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    23   6.7  
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    23   8.8  
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       23   8.8  

>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 26.2 bits (55), Expect = 0.72
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 53  YSDQIINMEVIVASVDHIKFDIDFA-LEEQYGALPLP 160
           Y+++I+N E     +D +    ++  LEE YG +P+P
Sbjct: 98  YAERIVNNEDKNVFLDSLLLSPNYEYLEENYGTIPVP 134


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 97  HTGHDNFHIYNLIRILNKNKHKS 29
           HTG    +I+   R+L  N+HKS
Sbjct: 231 HTGTKKPYIFKETRLLGNNEHKS 253


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 68  INMEVIVASVDHIKFDIDFALEEQYGALPLPFPGMDKSTAAVC 196
           +N+  IV + DH+  D DF  + + G   + F G DK    VC
Sbjct: 156 MNVGEIVCNADHLDKDDDFVRQLRIGKCFI-F-GEDKHNRPVC 196


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 135 NNMEHYHYLSLEWTNXXXXCVNSSVSLEVVAMALSVHTDMY 257
           NN  H+HY+ L W +     +N+   L  +  +L V   +Y
Sbjct: 126 NNTWHFHYIVLLWLS---QALNTPFPLNSLDDSLDVKKTIY 163


>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 86  VASVDHIKFDIDFALEEQYGAL 151
           V+  D    DI++ALE+ YG +
Sbjct: 106 VSPEDAASGDIEYALEDDYGRI 127


>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +1

Query: 166 WNGQINSSSV*ILQSAWRLW 225
           WN  +NS ++ +    W+ W
Sbjct: 45  WNSDLNSEALDVNSLQWQTW 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,092,338
Number of Sequences: 5004
Number of extensions: 18837
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)