Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G16
         (262 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0224 - 23427375-23427543,23428152-23428384                       28   1.2  
11_06_0683 + 26259129-26259968                                         27   2.7  
12_01_0805 - 7378364-7378435,7378534-7378616,7378843-7379020,737...    25   8.4  
03_06_0324 + 33133081-33133260,33133381-33133481,33133665-331337...    25   8.4  
02_05_0035 - 25268882-25268988,25269698-25269812,25270208-252702...    25   8.4  

>05_05_0224 - 23427375-23427543,23428152-23428384
          Length = 133

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 188 LLLICPFQGKVVVMLHIVLLKQNLYRILCDP 96
           +L I PF  K+ + L + L K +L+ I CDP
Sbjct: 34  ILSIIPFFLKLQIYLAVSLAKFDLFSICCDP 64


>11_06_0683 + 26259129-26259968
          Length = 279

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 260 HVHVCMDTEGHCH 222
           H+H C  T GHCH
Sbjct: 231 HLHYCHCTHGHCH 243


>12_01_0805 -
           7378364-7378435,7378534-7378616,7378843-7379020,
           7379822-7379977,7380205-7380308,7381653-7381695,
           7382142-7382234,7382391-7382686,7382795-7382942,
           7383577-7383615
          Length = 403

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 248 CMDTEGHCHNLQAD*RIHTLLLLI 177
           C +   H H L+ D ++H +LLL+
Sbjct: 14  CRNMAEHYHELEKDLKLHDVLLLL 37


>03_06_0324 +
           33133081-33133260,33133381-33133481,33133665-33133797,
           33133936-33134027,33134309-33134408,33134505-33134577,
           33134659-33134779,33135418-33135537,33136089-33136179,
           33136288-33136305
          Length = 342

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +1

Query: 31  ICVYFYLVF*SNYKYGSYRGQCG 99
           +C+Y  +V  +++K+G+  G+CG
Sbjct: 320 VCLYCRVVISTSHKWGAECGKCG 342


>02_05_0035 -
           25268882-25268988,25269698-25269812,25270208-25270276,
           25271409-25271511,25271904-25272205
          Length = 231

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/66 (21%), Positives = 24/66 (36%)
 Frame = -2

Query: 204 KNSHTAAVDLSIPGKGSGNAPYCSSKAKSISNFM*XXXXXXXXXXXXXXXXXXXINTNPS 25
           +N H  +   S    GSG  P C + +  +++ M                     ++N S
Sbjct: 18  RNQHVVSFQTSTIANGSGAIPVCPASSGGMNSDM-TLLNTTPSTIVSTSSPNMLADSNQS 76

Query: 24  KKYLSP 7
            KY +P
Sbjct: 77  LKYAAP 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,776,404
Number of Sequences: 37544
Number of extensions: 111342
Number of successful extensions: 231
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)