Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G16
(262 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10) 27 2.4
SB_48059| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.2
SB_17215| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.5
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.3
SB_37811| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.3
SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.3
SB_1080| Best HMM Match : Desmo_N (HMM E-Value=4.8) 25 7.3
SB_49377| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.7
SB_6952| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.7
>SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)
Length = 1272
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +1
Query: 73 YGSYRGQCGSHKIRYRFCFRRTIWSITTTFPWNGQINSSSV 195
YG Y + ++ + C+R IW P N SS V
Sbjct: 290 YGEYPAKYSNNMVNITLCYRMFIWRSLLKLPENHSAYSSLV 330
>SB_48059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVV-MLHIVLLKQNLYRI 108
+HT+ LLI P++G + +H V L N YR+
Sbjct: 6 VHTVRLLINPYRGDMACKTVHTVRLLINPYRV 37
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVVM-LHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 143 VHTVRLLINPYRGDMACQTVHTVRLLINPYR 173
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVVM-LHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 200 VHTVRLLINPYRGDMACQTVHTVRLLINPYR 230
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVVM-LHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 238 VHTVRLLINPYRGDMACQTVHTVRLLFNPYR 268
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVV-MLHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 124 VHTVRLLINPYRGDMACKTVHTVRLLINPYR 154
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVV-MLHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 162 VHTVRLLINPYRGDMACKTVHTVRLLINPYR 192
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVV-MLHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 181 VHTVRLLINPYRGDMACKTVHTVRLLINPYR 211
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVV-MLHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 219 VHTVRLLINPYRGDMACKTVHTVRLLINPYR 249
>SB_17215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 25.8 bits (54), Expect = 5.5
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +2
Query: 125 ALEEQYGALPLPFPGMDKS 181
A+++ +G +P PFP +DK+
Sbjct: 689 AVQQLFGIVPTPFPELDKT 707
>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +2
Query: 59 DQIINMEVIVASVDHIKFDIDFALEEQYGALPLPFPGMD 175
D + V+ A F DF LEE LPL G D
Sbjct: 982 DHHAQLSVLKALTRKFTFSADFRLEEFANKLPLNLTGAD 1020
>SB_37811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 738
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 26 EGFVFIFI*YSDQIINMEVIVASVDHIKFDIDFALE--EQYGALPL 157
EG F FI IN+E ++ DH+ + L + +G L L
Sbjct: 439 EGIAFYFIFSGSVFINVEELLKKSDHVMWHTSVILHRGDSFGELTL 484
>SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 88 GQCGSHKIRYRFCFRRTIWSITTTFPWNGQINSSSV 195
GQCG+HKI + IW T + SS V
Sbjct: 366 GQCGTHKICQGWVAMPDIWECPTCAAVKERTTSSGV 401
>SB_1080| Best HMM Match : Desmo_N (HMM E-Value=4.8)
Length = 364
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVV-MLHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 253 VHTVRLLINPYKGDMACKTVHTVRLPINPYR 283
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVV-MLHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 139 VHTVRLLINPYKGDMACKTVHTVRLLINPYR 169
>SB_49377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVV-MLHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 6 VHTVRLLINPYRGDMACKTVHTVRLLINPYR 36
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVV-MLHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 25 VHTVRLLINPYRGDMACKTVHTVRLLINPYR 55
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVV-MLHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 63 VHTVRLLINPYKGDMACKTVHTVRLLINPYR 93
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVV-MLHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 82 VHTVRLLINPYRGDMACKTVHTVRLLINPYR 112
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVV-MLHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 101 VHTVRLLINPYRGDMACKTVHTVRLLINPYR 131
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVV-MLHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 158 VHTVRLLINPYRGDMACKTVHTVRLLINPYR 188
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVV-MLHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 177 VHTVRLLINPYRGDMACKTVHTVRLLINPYR 207
>SB_6952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVV-MLHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 82 VHTVRLLINPYRGDMACKTVHTVRLLINPYR 112
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVV-MLHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 101 VHTVRLLINPYRGDMACKTVHTVRLLINPYR 131
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVV-MLHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 120 VHTVRLLINPYRGDMACKTVHTVRLLINPYR 150
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVV-MLHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 139 VHTVRLLINPYRGDMACKTVHTVRLLINPYR 169
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVV-MLHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 158 VHTVRLLINPYRGDMACKTVHTVRLLINPYR 188
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 200 IHTLLLLICPFQGKVVV-MLHIVLLKQNLYR 111
+HT+ LLI P++G + +H V L N YR
Sbjct: 234 VHTVRLLINPYRGDMACKTVHTVRLLINPYR 264
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,973,433
Number of Sequences: 59808
Number of extensions: 133812
Number of successful extensions: 361
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 16,821,457
effective HSP length: 63
effective length of database: 13,053,553
effective search space used: 300231719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -