Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G16
         (262 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U79569-1|AAD00321.1|  269|Homo sapiens no arches protein.              77   1e-14
EF191081-1|ABN05292.1|  269|Homo sapiens cleavage and polyadenyl...    77   1e-14
CR542161-1|CAG46958.1|  269|Homo sapiens CPSF4 protein.                77   1e-14
BC050738-1|AAH50738.1|  243|Homo sapiens CPSF4 protein protein.        77   1e-14
BC003101-1|AAH03101.1|  244|Homo sapiens cleavage and polyadenyl...    77   1e-14

>U79569-1|AAD00321.1|  269|Homo sapiens no arches protein.
          Length = 269

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 33/44 (75%), Positives = 39/44 (88%)
 Frame = +2

Query: 74  MEVIVASVDHIKFDIDFALEEQYGALPLPFPGMDKSTAAVCEFF 205
           M+ I+ASVDHIKFD++ A+E+Q GA PLPFPGMDKS AAVCEFF
Sbjct: 1   MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFF 44


>EF191081-1|ABN05292.1|  269|Homo sapiens cleavage and
           polyadenylation specific factor 4, 30kDa protein.
          Length = 269

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 33/44 (75%), Positives = 39/44 (88%)
 Frame = +2

Query: 74  MEVIVASVDHIKFDIDFALEEQYGALPLPFPGMDKSTAAVCEFF 205
           M+ I+ASVDHIKFD++ A+E+Q GA PLPFPGMDKS AAVCEFF
Sbjct: 1   MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFF 44


>CR542161-1|CAG46958.1|  269|Homo sapiens CPSF4 protein.
          Length = 269

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 33/44 (75%), Positives = 39/44 (88%)
 Frame = +2

Query: 74  MEVIVASVDHIKFDIDFALEEQYGALPLPFPGMDKSTAAVCEFF 205
           M+ I+ASVDHIKFD++ A+E+Q GA PLPFPGMDKS AAVCEFF
Sbjct: 1   MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFF 44


>BC050738-1|AAH50738.1|  243|Homo sapiens CPSF4 protein protein.
          Length = 243

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 33/44 (75%), Positives = 39/44 (88%)
 Frame = +2

Query: 74  MEVIVASVDHIKFDIDFALEEQYGALPLPFPGMDKSTAAVCEFF 205
           M+ I+ASVDHIKFD++ A+E+Q GA PLPFPGMDKS AAVCEFF
Sbjct: 1   MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFF 44


>BC003101-1|AAH03101.1|  244|Homo sapiens cleavage and
           polyadenylation specific factor 4, 30kDa protein.
          Length = 244

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 33/44 (75%), Positives = 39/44 (88%)
 Frame = +2

Query: 74  MEVIVASVDHIKFDIDFALEEQYGALPLPFPGMDKSTAAVCEFF 205
           M+ I+ASVDHIKFD++ A+E+Q GA PLPFPGMDKS AAVCEFF
Sbjct: 1   MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFF 44


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,607,633
Number of Sequences: 237096
Number of extensions: 672330
Number of successful extensions: 944
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 76,859,062
effective HSP length: 64
effective length of database: 61,684,918
effective search space used: 1357068196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)