Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G16
         (262 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68297-6|CAE45045.1|  302|Caenorhabditis elegans Hypothetical pr...    27   1.4  
Z75531-2|CAA99804.2|  278|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AY728063-1|AAU43724.1|  278|Caenorhabditis elegans cadmium-induc...    27   1.8  
AF040655-6|AAB95043.2|  296|Caenorhabditis elegans Serpentine re...    27   1.8  
AL132859-6|CAB60493.3|  324|Caenorhabditis elegans Hypothetical ...    26   4.2  
Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical p...    25   5.6  
Z81015-1|CAB02655.1|  224|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U23454-7|AAC46515.1|  612|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U23454-1|AAC46520.1|  189|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z81015-7|CAB02659.3|  223|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z36238-5|CAA85277.1|  381|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AF068713-10|AAC17801.1|  376|Caenorhabditis elegans Serpentine r...    25   9.8  
AF039710-1|AAB96691.1|  316|Caenorhabditis elegans Serpentine re...    25   9.8  
AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    25   9.8  

>Z68297-6|CAE45045.1|  302|Caenorhabditis elegans Hypothetical
           protein F11A10.8 protein.
          Length = 302

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 74  MEVIVASVDHIKFDIDFALEEQYGALPLPFPGMDKSTAAVC 196
           M  +V+++     D++ AL  Q G    PF  +D+S  AVC
Sbjct: 15  MTDLVSNITAPMTDVEEALFNQRGMKEAPFRDLDRSGKAVC 55


>Z75531-2|CAA99804.2|  278|Caenorhabditis elegans Hypothetical
           protein C54D10.2 protein.
          Length = 278

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 94  CGSHKIRYRFCFRRTIWSITTTFPW 168
           C ++K+ Y  C  + IWS   T P+
Sbjct: 71  CRAYKVPYEICDEKLIWSRNGTLPF 95


>AY728063-1|AAU43724.1|  278|Caenorhabditis elegans
           cadmium-inducible lysosomal proteinCDR-3 protein.
          Length = 278

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 94  CGSHKIRYRFCFRRTIWSITTTFPW 168
           C ++K+ Y  C  + IWS   T P+
Sbjct: 71  CRAYKVPYEICDEKLIWSRNGTLPF 95


>AF040655-6|AAB95043.2|  296|Caenorhabditis elegans Serpentine
           receptor, class x protein112 protein.
          Length = 296

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 150 YHYLSLEWTNXXXXCVNSSVSLEVVAMALSVHT 248
           +H+L+LE T+    CV+ ++S  ++ +   V+T
Sbjct: 31  FHFLTLEKTSFHLLCVSKTLSNSLILLVYLVYT 63


>AL132859-6|CAB60493.3|  324|Caenorhabditis elegans Hypothetical
           protein Y39C12A.7 protein.
          Length = 324

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -3

Query: 257 VHVCMD--TEGHCHNLQAD*RIHTLLLLICPFQGKVVVMLHIVLLKQNLYRILCDP 96
           ++VC+D  T G  +N++   RIH  + + CP    V ++  I+++       +C P
Sbjct: 41  LNVCIDYRTRGSMNNIR---RIHQFVYVTCPINHIVFIVEKILIIWDFKEGFMCLP 93


>Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical
           protein F14F8.13 protein.
          Length = 328

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 142 ILFF*SKIYIEFYVIHTGHDNFH-IYNLIRILNKNKH 35
           I  +    +I FY++H     FH I  L+ ILN  K+
Sbjct: 99  IFIYCFSFFIIFYILHVLQQTFHVILFLLAILNSLKY 135


>Z81015-1|CAB02655.1|  224|Caenorhabditis elegans Hypothetical
           protein C11E4.2 protein.
          Length = 224

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 94  TGHDNFHIYNLIRILNKNKHKSFEKVSE 11
           T H   HIY  I +   N H  +E V E
Sbjct: 129 TPHQELHIYGKIDVNGDNHHPLYEFVKE 156


>U23454-7|AAC46515.1|  612|Caenorhabditis elegans Hypothetical
           protein C10A4.1 protein.
          Length = 612

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 89  ASVDHIKFDIDFALEEQYGALPLPFPGMDKSTAAVCE 199
           A   + KFD +  +E++    P P P  D S  A  E
Sbjct: 481 APAKNAKFDFEKFIEKRISEQPKPIPNCDNSLTARME 517


>U23454-1|AAC46520.1|  189|Caenorhabditis elegans Hypothetical
           protein C10A4.6 protein.
          Length = 189

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 194 TLLLLICPFQGKVVVMLHIVLLKQNLYRILCDPHWPR*LPYL*F 63
           TL L +  F   +V +   +L  +  Y  + DPH+PR L Y+ F
Sbjct: 16  TLRLTLLIFSVAIVCLYISILYLEKTYPRV-DPHYPRKLVYICF 58


>Z81015-7|CAB02659.3|  223|Caenorhabditis elegans Hypothetical
           protein C11E4.1 protein.
          Length = 223

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 88  HDNFHIYNLIRILNKNKHKSFEKVSE 11
           H N HIY  +     N+H  +E V E
Sbjct: 130 HQNLHIYGKLDTNGDNQHPIYEFVKE 155


>Z36238-5|CAA85277.1|  381|Caenorhabditis elegans Hypothetical
          protein R74.6 protein.
          Length = 381

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 85 DNFHIYNLIRILNKNKHKSFEKV 17
          D +HIYNLIRI +  K  +  KV
Sbjct: 25 DMWHIYNLIRIGDIIKASTIRKV 47


>AF068713-10|AAC17801.1|  376|Caenorhabditis elegans Serpentine
           receptor, class w protein130 protein.
          Length = 376

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/15 (73%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
 Frame = +2

Query: 161 FPGMDKSTA-AVCEF 202
           FPG DKSTA A C+F
Sbjct: 14  FPGYDKSTALAYCDF 28


>AF039710-1|AAB96691.1|  316|Caenorhabditis elegans Serpentine
           receptor, class x protein110 protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 150 YHYLSLEWTNXXXXCVNSSVSLEVVAM 230
           YH+LSLE T     C + S+S  +V +
Sbjct: 36  YHFLSLEKTVFYILCSSKSISNTLVLL 62


>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 19  LFRRICVYFYLVF*SNYKYGSYRGQCGSHKI 111
           LF    +++ L F +N  YG+YR    S+ I
Sbjct: 17  LFSNTMLFYLLTFKANTSYGAYRRLMFSYTI 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,946,255
Number of Sequences: 27780
Number of extensions: 104278
Number of successful extensions: 216
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)