Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G16
         (262 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55930.1 68418.m06976 oligopeptide transporter OPT family pro...    27   1.3  
At3g61480.1 68416.m06885 expressed protein                             26   3.0  
At1g34500.1 68414.m04288 membrane bound O-acyl transferase (MBOA...    26   3.0  
At5g24960.1 68418.m02955 cytochrome P450 71A14, putative (CYP71A...    25   5.2  
At4g00300.1 68417.m00037 fringe-related protein + weak similarit...    25   5.2  
At3g24090.1 68416.m03025 glucosamine--fructose-6-phosphate amino...    25   5.2  
At5g08510.1 68418.m01009 pentatricopeptide (PPR) repeat-containi...    25   6.9  
At5g15410.2 68418.m01803 cyclic nucleotide-regulated ion channel...    25   9.1  
At5g15410.1 68418.m01804 cyclic nucleotide-regulated ion channel...    25   9.1  
At1g51120.1 68414.m05747 AP2 domain-containing transcription fac...    25   9.1  

>At5g55930.1 68418.m06976 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe},
           oligopeptide transporter Opt1p [Candida albicans]
           GI:2367386; contains Pfam profile PF03169: OPT
           oligopeptide transporter protein
          Length = 755

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 109 FYVIHTGHDNFHIYNLIRILNK 44
           FY  HT     H YN+ RILN+
Sbjct: 332 FYTSHTFDQTGHTYNITRILNE 353


>At3g61480.1 68416.m06885 expressed protein
          Length = 1091

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 83   IVASVDHIKFDIDFALEEQYGALPL 157
            +VA V   +FDIDF   E+YG   L
Sbjct: 961  LVAFVKGTQFDIDFLQRERYGCAQL 985


>At1g34500.1 68414.m04288 membrane bound O-acyl transferase (MBOAT)
           family protein / wax synthase-related similar to wax
           synthase [Simmondsia chinensis] GI:5020219; contains
           Pfam profile PF03062: MBOAT family
          Length = 341

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 103 HKIRYRFCFRRT-IWSITTTFPWNGQINSSSV*ILQSAWRLWQWP 234
           H++ Y +  R T  W +T  F  NG    + V + ++A+    WP
Sbjct: 244 HELVYFYITRETPTWEVTLFFVLNGVCTGTEVAVKRTAFLQRWWP 288


>At5g24960.1 68418.m02955 cytochrome P450 71A14, putative (CYP71A14)
           identical to Cytochrome P450 71A14 (SP:P58045)
           [Arabidopsis thaliana]; cytochrome P450 - Nepeta
           racemosa, EMBL:Y09423
          Length = 497

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 64  LIRILNKNKHKSFEKVSE 11
           ++ +LNK K +SFEKV E
Sbjct: 133 IVNLLNKKKVQSFEKVRE 150


>At4g00300.1 68417.m00037 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 785

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 79  FHIYNLIRILNKNKHKSFEKVSEP 8
           F   NL+R+L K  HK F  +  P
Sbjct: 189 FFTENLVRVLRKYDHKQFYYIGAP 212


>At3g24090.1 68416.m03025 glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing], putative /
           hexosephosphate aminotransferase, putative /
           glucosamine-6-phosphate synthase, putative /
           D-fructose-6-phosphate amidotransferase, putative /
           GLCN6P synthase, putative similar to SP|O94808
           Glucosamine--fructose-6-phosphate aminotransferase
           [isomerizing] 2 (EC 2.6.1.16) (Hexosephosphate
           aminotransferase 2) (D-fructose-6- phosphate
           amidotransferase 2) {Homo sapiens}; contains Pfam
           profiles PF00310: Glutamine amidotransferases class-II,
           PF01380:SIS domain
          Length = 691

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 121 IYIEFYVIHTGHDNFHIYNLIRILNKNKH-KSFEKVSEP 8
           +++    +  G  N H++     L+KN H K F   S+P
Sbjct: 221 LFVSLLELDQGESNSHVFQDAHFLSKNDHPKEFFLSSDP 259


>At5g08510.1 68418.m01009 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 511

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 145 SILFF*SKIYIEFYVIHTGHDNFHIYNLI 59
           S  F  +K+   +YV H  H++  +YNL+
Sbjct: 45  SCTFLYNKLIQAYYVHHQPHESIVLYNLL 73


>At5g15410.2 68418.m01803 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC2) identical to
           cyclic nucleotide-gated cation channel GI:3894399 from
           [Arabidopsis thaliana]
          Length = 593

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 188 LLLICPFQGKVVVMLHIVLLKQNLYRILC-DPHW 90
           LLL     G + V LH V+ K+   +I C D  W
Sbjct: 305 LLLFTLLIGNIQVFLHAVMAKKRKMQIRCRDMEW 338


>At5g15410.1 68418.m01804 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC2) identical to
           cyclic nucleotide-gated cation channel GI:3894399 from
           [Arabidopsis thaliana]
          Length = 726

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 188 LLLICPFQGKVVVMLHIVLLKQNLYRILC-DPHW 90
           LLL     G + V LH V+ K+   +I C D  W
Sbjct: 438 LLLFTLLIGNIQVFLHAVMAKKRKMQIRCRDMEW 471


>At1g51120.1 68414.m05747 AP2 domain-containing transcription
           factor, putative similar to DNA-binding protein RAV1
           GI:3868857 from [Arabidopsis thaliana]
          Length = 352

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 112 RYRFCFRRTIWSITTTFPWNGQINSSSV 195
           ++R+C+ R+  S   T  WNG +   ++
Sbjct: 236 KFRYCYWRSSQSFVFTRGWNGFVKEKNL 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,573,455
Number of Sequences: 28952
Number of extensions: 94913
Number of successful extensions: 240
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,070,560
effective HSP length: 65
effective length of database: 10,188,680
effective search space used: 213962280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)