Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G15
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    31   0.13 
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    27   2.2  
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    26   2.9  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   2.9  
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    26   2.9  

>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 349 NDSHHIRNSSIPATGKARSRTDGHYVSNMQQNCCHQSGLRTEQSNTHHI 495
           NDS H+R+S+      + +  DGH+V ++  N    S   T +SNT  +
Sbjct: 72  NDSGHVRSSNDRIPSTSSNHADGHHVDSVFSNL---SAKPTVESNTEEL 117


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 340 FTANDSHHIRNSSIPATGKARSRTDGHY 423
           FT  D  HIR ++ P     +S TD HY
Sbjct: 392 FTGIDWDHIRETAAPFIPNLKSITDTHY 419


>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 222 KIKW--VYRRLMNKQCQIQHRHRHTSVIIHHRRPVW*SLQTLHRERQSSHPE 371
           ++ W  +YRR+  K    +H  + T   + H+R +  +   + +E+++  PE
Sbjct: 48  RLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPE 99


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 126 KFVKCHVLQVFIKGLTNRSKVEFH 197
           + V   VL +FIKG  N   VEFH
Sbjct: 592 RVVAAKVLPIFIKGPNNLDIVEFH 615


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 222 KIKW--VYRRLMNKQCQIQHRHRHTSVIIHHRRPVW*SLQTLHRERQSSHPE 371
           ++ W  +YRR+  K    +H  + T   + H+R +  +   + +E+++  PE
Sbjct: 48  RLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPE 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,936,460
Number of Sequences: 5004
Number of extensions: 35547
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)