Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G15
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0204 - 26721498-26721545,26721731-26721823,26723822-267239...    30   0.95 
10_08_0459 + 18092656-18092724,18092827-18092886,18092970-180930...    29   2.9  
03_04_0155 - 17773121-17773576,17773744-17774322                       29   2.9  

>02_05_0204 -
           26721498-26721545,26721731-26721823,26723822-26723931,
           26724029-26724129,26724691-26724917
          Length = 192

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 349 NDSHHIRNSSIPATGKARSRTDGHYVSNMQQNCCHQSGL 465
           N   H RN ++P  G +RSR    +++    + CH   L
Sbjct: 12  NACSHPRNDAVPRAGSSRSRRSSLHLAGRHSHRCHARAL 50


>10_08_0459 +
           18092656-18092724,18092827-18092886,18092970-18093038,
           18093134-18093178,18093706-18094332,18094424-18094597,
           18094688-18094991,18095070-18095161,18095253-18095319,
           18095407-18095478,18095613-18095830,18095979-18096113,
           18096225-18096520,18096603-18096774,18096860-18096958,
           18097048-18097179,18097273-18097373,18097460-18097649,
           18097713-18097751
          Length = 986

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
 Frame = -3

Query: 479 DCSVRNPL---W*QQFCCMFDT*CPSVRDLAFPVAGMLLFRM**LSFAVKCLEGSPNRAA 309
           DC+++N L     ++ C MFD+ C S+  +     G LL  +  +     C E   N   
Sbjct: 364 DCALQNMLPVYMKEKICSMFDSHCTSLHTIDDSSCGDLLISVLAMIGEASCNESDQNVVI 423

Query: 308 VVDYHRSMTVAVLDLTLFVHKAAVNPFYF 222
             +   ++  +  D  + +  A ++  YF
Sbjct: 424 EENVIENVGTSKADDDIGISSAGISALYF 452


>03_04_0155 - 17773121-17773576,17773744-17774322
          Length = 344

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 339 LHRERQSSHPEQQHPGHRES*VPDRRALRVKHATKLLSPEWITYRTIEHTSYPPL 503
           L +++Q   P Q HP HR    P ++   V     LLS  ++ +  I H  + P+
Sbjct: 206 LQKQKQVEKPNQTHPSHRGLKSPTKKTAFV----LLLSLLFLVHIAISHALFSPI 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,347,182
Number of Sequences: 37544
Number of extensions: 225106
Number of successful extensions: 531
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)