Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G15
         (514 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.079
SB_39486| Best HMM Match : PsiF_repeat (HMM E-Value=5.9)               30   1.3  
SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2)              30   1.3  
SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)                28   5.2  
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)                28   5.2  
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)                27   6.9  
SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)              27   9.1  

>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 33.9 bits (74), Expect = 0.079
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 301 STTAARFGDPSKHFTANDSHHIRNSSIPATGKARSRTDGHYVSNMQQNCCHQSGLRTEQS 480
           ST    +  P+ +F A  +  +  S     GK+  +TDG  +   QQN  HQ     +QS
Sbjct: 128 STHLPSYNLPNSNFQAWLNIKLEESQTKGKGKSTQQTDGQTLKYQQQNALHQQSALQQQS 187


>SB_39486| Best HMM Match : PsiF_repeat (HMM E-Value=5.9)
          Length = 91

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +1

Query: 343 TANDSHHIRNSSIPATGKARSRTDGHYVSNMQQNCCHQSGLRTEQSNTH 489
           TA + HH R+SS+PA G+ +S T+       Q     Q+   TE+S  H
Sbjct: 38  TAQERHHHRSSSVPAHGRPQS-TEPRL---KQSTATGQNTTITEESEVH 82


>SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2)
          Length = 269

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +1

Query: 343 TANDSHHIRNSSIPATGKARSRTDGHYVSNMQQNCCHQSGLRTEQSNTH 489
           TA + HH R+SS+PA G+ +S T+       Q     Q+   TE+S  H
Sbjct: 38  TAQERHHHRSSSVPAHGRPQS-TEPRL---KQSTATGQNTTITEESEVH 82


>SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)
          Length = 293

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = +3

Query: 285 HTSVIIHHRRPVW*SLQTLHRERQSSHPEQQHPGHRES*VPDRRALRVKHATKLLSPEWI 464
           HT     H R  W   +T HR + ++   +QH  H E  +     L + H  ++++    
Sbjct: 196 HTQNNSSHTRNNWSHTRTTHRTQGTTRRTEQHIAHTEQLIAHTEQL-IAHTEQVITQ--- 251

Query: 465 TYRTIEHT 488
           T   I HT
Sbjct: 252 TEHLIAHT 259


>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
          Length = 237

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 267 IQHRHRHTSVIIHHRRPVW*SLQTLHRERQSSHPEQQHPGHR 392
           I HRHRH     HH   +   L+  HR+  + H  + H  HR
Sbjct: 165 IIHRHRHHHHHHHHPSTIIIILRHRHRQHYNRH-RRHHHHHR 205


>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
          Length = 1060

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 382 PATGKARSRTDGHYVSNMQQNCCHQSGLRTEQSNTHHI 495
           P T      T  H+++  Q  C H      E ++THHI
Sbjct: 722 PITSSTPQTTSTHHITTPQTTCTHHL-TTPETTSTHHI 758


>SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
          Length = 1043

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 348 ERQSSHPEQQHPGH-RES*VPDRRAL 422
           ER  SH E Q PG   +S  PDRR L
Sbjct: 663 ERSGSHSEPQSPGRGHQSGSPDRRQL 688


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,400,781
Number of Sequences: 59808
Number of extensions: 269565
Number of successful extensions: 637
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)