Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G15
         (514 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63720.1 68418.m07998 hypothetical protein                          30   0.80 
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ...    29   1.4  
At1g71930.1 68414.m08315 no apical meristem (NAM) family protein...    27   7.4  

>At5g63720.1 68418.m07998 hypothetical protein 
          Length = 492

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = +3

Query: 237 YRRLMNKQCQIQHRHRHTSVIIHH---RRP-VW*SLQT-LHRERQSSHPEQQHP 383
           ++R+ NK  QI H H H     HH    +P  W  LQ+  H + Q    E++ P
Sbjct: 357 FKRIKNKIGQIFHHHHHHHHHHHHHDKEKPSAWNKLQSKFHHKHQEKSKERKRP 410


>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
           protein
          Length = 561

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 370 NSSIPATGKARSRTDGHYVSNMQQNCCHQSGLRTEQSNTHHIRRS 504
           +  + + GK RSR+  H     ++    + G R+++S +HH  RS
Sbjct: 28  DEKVKSEGKERSRSSRHRGDKKKERDEDEDGRRSKRSRSHHRSRS 72


>At1g71930.1 68414.m08315 no apical meristem (NAM) family protein
           similar to NAM GB:CAA63101 from [Petunia x hybrida]
          Length = 324

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +1

Query: 331 SKHFTANDSHHIRNSSIPATGKARSRTDGHYVSNMQQNCCHQSG 462
           S   T N SHHI  SS          ++ HY  N   +  HQ G
Sbjct: 185 SSSVTMNTSHHIGASSSSHNLNQMLMSNNHYNPNNTSSSMHQYG 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,965,008
Number of Sequences: 28952
Number of extensions: 182084
Number of successful extensions: 387
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)