Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G14
(529 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 242 1e-64
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 242 1e-64
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 146 1e-35
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 5e-07
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 31 0.76
06_02_0197 - 12912818-12913411,12913505-12913732 30 1.3
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 29 2.3
04_03_1015 - 21734381-21736534 29 3.1
04_03_0232 - 13049649-13052807 29 3.1
09_04_0620 - 19011828-19011896,19012015-19012387,19013158-19013486 27 9.3
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 27 9.3
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 242 bits (593), Expect = 1e-64
Identities = 110/146 (75%), Positives = 125/146 (85%)
Frame = +3
Query: 27 AIVMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGV 206
++ MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+
Sbjct: 168 SVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGI 226
Query: 207 EAKQPNSAIRKCVRVQLINNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 386
EAKQPNSAIRKC RVQL+ NGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPG
Sbjct: 227 EAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPG 286
Query: 387 VRFKVVKVANVSLLALYKEKKERPRS 464
VRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 287 VRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 238 bits (583), Expect = 2e-63
Identities = 108/141 (76%), Positives = 121/141 (85%)
Frame = +3
Query: 36 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 215
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 216 QPNSAIRKCVRVQLINNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 395
QPNSAIRKC RVQL+ NGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 396 KVVKVANVSLLALYKEKKERP 458
KVVKV+ VSLLAL+KEKKE+P
Sbjct: 120 KVVKVSGVSLLALFKEKKEKP 140
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 242 bits (592), Expect = 1e-64
Identities = 110/143 (76%), Positives = 123/143 (86%)
Frame = +3
Query: 36 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 215
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 216 QPNSAIRKCVRVQLINNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 395
QPNSAIRKC RVQL+ NGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 396 KVVKVANVSLLALYKEKKERPRS 464
KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 146 bits (353), Expect = 1e-35
Identities = 66/102 (64%), Positives = 76/102 (74%)
Frame = +3
Query: 42 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQP 221
K G+ RK HRR QRWADK +KK+H G WK PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 74 KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132
Query: 222 NSAIRKCVRVQLINNGKKVTAFVPRDGCLNHIEENDEVLVAG 347
NSAI KC RVQL+ NGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 133 NSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 5e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3
Query: 327 DEVLVAGFGRKGHAVGDIPGVRFKVVK 407
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 30.7 bits (66), Expect = 0.76
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -1
Query: 409 TLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 278
TL+ LNL G SP P P P + SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 252 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR 154
V +H WL +A+ LQR +FR H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQR 217
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 11 ADRXSRYR-NG*TSGYSHGAQARESSSRAAMGRQGIQKSP 127
A + + YR +G +GY HG + + SSR + R G+ +P
Sbjct: 181 AAKRACYRVHGMATGYCHGCRCQRCSSRPSRDRDGVAWAP 220
>04_03_1015 - 21734381-21736534
Length = 717
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +3
Query: 222 NSAIRKCVRVQLINNGKKVTAFVPRDG 302
+SA+ C + L+N+GK++ A++ R+G
Sbjct: 492 SSALAACANIFLLNHGKQIHAYMIRNG 518
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -2
Query: 513 ASRRRQRVTHLSQCKPMTWASPSFL-CTEL 427
++R R RV HLSQC +++SP FL C+ L
Sbjct: 346 SNRSRLRVLHLSQC-TFSFSSPPFLGCSNL 374
>09_04_0620 - 19011828-19011896,19012015-19012387,19013158-19013486
Length = 256
Score = 27.1 bits (57), Expect = 9.3
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -1
Query: 457 GLSFFSLYRARSDTFATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNA- 281
GLS F Y +S +F +L +P + NP + W R+ S + A
Sbjct: 112 GLSNF--YAGKSKSFTSLAEATASPAAAANELAKPENPFNKRRRILATWSRRASCSSLAT 169
Query: 280 VTFLPLLMS 254
T+LP L++
Sbjct: 170 ATYLPPLLA 178
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 403 TTLNLTPGMSPTAWPLRPNPATNTSS 326
TT TP M+P P P+P TN ++
Sbjct: 310 TTTTPTPFMNPVTAPTMPSPVTNPAT 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,984,025
Number of Sequences: 37544
Number of extensions: 381187
Number of successful extensions: 1062
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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