Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G14
         (529 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S...   265   8e-71
CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.               265   8e-71
BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23 p...   265   8e-71
AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23 p...   119   7e-27
Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal p...    54   2e-07
CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.               54   2e-07
BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal...    54   2e-07
BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal...    54   2e-07
BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal...    54   2e-07
AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12 p...    54   2e-07
X72012-1|CAA50891.1|  625|Homo sapiens endoglin protein.               30   5.8  
DQ866809-1|ABI75346.1|  625|Homo sapiens endoglin (Osler-Rendu-W...    30   5.8  
AL162586-6|CAI39765.1|  625|Homo sapiens endoglin (Osler-Rendu-W...    30   5.8  
AL157935-2|CAI12605.1|  625|Homo sapiens endoglin (Osler-Rendu-W...    30   5.8  
BC068549-1|AAH68549.1|  862|Homo sapiens LOC100101438 protein pr...    29   7.6  
AY186778-1|AAO27434.1|  727|Homo sapiens polymerase protein.           29   7.6  
AL365510-1|CAM19360.1|  862|Homo sapiens Novel protein similar t...    29   7.6  

>D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S28
           homologue protein.
          Length = 143

 Score =  265 bits (649), Expect = 8e-71
 Identities = 125/143 (87%), Positives = 133/143 (93%)
 Frame = +3

Query: 36  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 215
           MGK RG+RTARK  +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1   MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60

Query: 216 QPNSAIRKCVRVQLINNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 395
           QPNSAIRKCVRVQLI NGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120

Query: 396 KVVKVANVSLLALYKEKKERPRS 464
           KVVKVANVSLLALYK KKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143


>CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.
          Length = 143

 Score =  265 bits (649), Expect = 8e-71
 Identities = 125/143 (87%), Positives = 133/143 (93%)
 Frame = +3

Query: 36  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 215
           MGK RG+RTARK  +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1   MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60

Query: 216 QPNSAIRKCVRVQLINNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 395
           QPNSAIRKCVRVQLI NGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120

Query: 396 KVVKVANVSLLALYKEKKERPRS 464
           KVVKVANVSLLALYK KKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143


>BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23
           protein.
          Length = 143

 Score =  265 bits (649), Expect = 8e-71
 Identities = 125/143 (87%), Positives = 133/143 (93%)
 Frame = +3

Query: 36  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 215
           MGK RG+RTARK  +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1   MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60

Query: 216 QPNSAIRKCVRVQLINNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 395
           QPNSAIRKCVRVQLI NGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120

Query: 396 KVVKVANVSLLALYKEKKERPRS 464
           KVVKVANVSLLALYK KKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143


>AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23
           protein.
          Length = 59

 Score =  119 bits (286), Expect = 7e-27
 Identities = 56/59 (94%), Positives = 56/59 (94%)
 Frame = +3

Query: 285 FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 461
           FVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 1   FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59


>Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 precursor protein.
          Length = 138

 Score = 54.4 bits (125), Expect = 2e-07
 Identities = 35/88 (39%), Positives = 51/88 (57%)
 Frame = +3

Query: 144 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLINNGKKVTAFVPRDGCLNHIEE 323
           K  P  G    KG+VL     + K+PNSA RKC RV+L + G++   F+P +G  + ++E
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104

Query: 324 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 407
           +  VLV G GR      D+PGV+  VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127


>CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.
          Length = 138

 Score = 54.4 bits (125), Expect = 2e-07
 Identities = 35/88 (39%), Positives = 51/88 (57%)
 Frame = +3

Query: 144 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLINNGKKVTAFVPRDGCLNHIEE 323
           K  P  G    KG+VL     + K+PNSA RKC RV+L + G++   F+P +G  + ++E
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104

Query: 324 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 407
           +  VLV G GR      D+PGV+  VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127


>BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 54.4 bits (125), Expect = 2e-07
 Identities = 35/88 (39%), Positives = 51/88 (57%)
 Frame = +3

Query: 144 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLINNGKKVTAFVPRDGCLNHIEE 323
           K  P  G    KG+VL     + K+PNSA RKC RV+L + G++   F+P +G  + ++E
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104

Query: 324 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 407
           +  VLV G GR      D+PGV+  VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127


>BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 54.4 bits (125), Expect = 2e-07
 Identities = 35/88 (39%), Positives = 51/88 (57%)
 Frame = +3

Query: 144 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLINNGKKVTAFVPRDGCLNHIEE 323
           K  P  G    KG+VL     + K+PNSA RKC RV+L + G++   F+P +G  + ++E
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104

Query: 324 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 407
           +  VLV G GR      D+PGV+  VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127


>BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 54.4 bits (125), Expect = 2e-07
 Identities = 35/88 (39%), Positives = 51/88 (57%)
 Frame = +3

Query: 144 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLINNGKKVTAFVPRDGCLNHIEE 323
           K  P  G    KG+VL     + K+PNSA RKC RV+L + G++   F+P +G  + ++E
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104

Query: 324 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 407
           +  VLV G GR      D+PGV+  VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127


>AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12
           protein.
          Length = 138

 Score = 54.4 bits (125), Expect = 2e-07
 Identities = 35/88 (39%), Positives = 51/88 (57%)
 Frame = +3

Query: 144 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLINNGKKVTAFVPRDGCLNHIEE 323
           K  P  G    KG+VL     + K+PNSA RKC RV+L + G++   F+P +G  + ++E
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104

Query: 324 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 407
           +  VLV G GR      D+PGV+  VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127


>X72012-1|CAA50891.1|  625|Homo sapiens endoglin protein.
          Length = 625

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 167 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 45
           CT++G+ LP+   + F  FL+G  L A + ++ +     PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622


>DQ866809-1|ABI75346.1|  625|Homo sapiens endoglin
           (Osler-Rendu-Weber syndrome 1) protein.
          Length = 625

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 167 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 45
           CT++G+ LP+   + F  FL+G  L A + ++ +     PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622


>AL162586-6|CAI39765.1|  625|Homo sapiens endoglin
           (Osler-Rendu-Weber syndrome 1) protein.
          Length = 625

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 167 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 45
           CT++G+ LP+   + F  FL+G  L A + ++ +     PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622


>AL157935-2|CAI12605.1|  625|Homo sapiens endoglin
           (Osler-Rendu-Weber syndrome 1) protein.
          Length = 625

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 167 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 45
           CT++G+ LP+   + F  FL+G  L A + ++ +     PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622


>BC068549-1|AAH68549.1|  862|Homo sapiens LOC100101438 protein
           protein.
          Length = 862

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 361 PLRPNPATNTSSFSSMWLRQPSRGTNAVTFLPLL 260
           PL+P+P+    S SS   R  S G + +T+ PL+
Sbjct: 401 PLKPSPSKKLRSGSSFSQRAGSSGNSCITYKPLV 434


>AY186778-1|AAO27434.1|  727|Homo sapiens polymerase protein.
          Length = 727

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 1/105 (0%)
 Frame = +3

Query: 45  PRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLE-KVGVEAKQP 221
           P  I   R H N       A++E          KA      +H     L+ K  V  KQ 
Sbjct: 421 PFYITHIRAHTNLPGPLTKANEEADLLVSSALIKAQELHALTHVNAAGLKNKFDVTWKQA 480

Query: 222 NSAIRKCVRVQLINNGKKVTAFVPRDGCLNHIEENDEVLVAGFGR 356
              ++ C + Q+++   +     PR  C N + + D   V  FGR
Sbjct: 481 KDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALWQMDVTHVPSFGR 525


>AL365510-1|CAM19360.1|  862|Homo sapiens Novel protein similar to
           phosphatidylinositol-4-phosphate 5-kinase, type I, alp
           protein.
          Length = 862

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 361 PLRPNPATNTSSFSSMWLRQPSRGTNAVTFLPLL 260
           PL+P+P+    S SS   R  S G + +T+ PL+
Sbjct: 401 PLKPSPSKKLRSGSSFSQRAGSSGNSCITYQPLV 434


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,826,628
Number of Sequences: 237096
Number of extensions: 2108981
Number of successful extensions: 4673
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4648
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5103531180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)