Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G14
         (529 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...   237   3e-63
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...   228   2e-60
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam...    34   0.051
At3g17900.1 68416.m02280 expressed protein                             28   4.5  
At1g32960.1 68414.m04059 subtilase family protein contains simil...    28   4.5  
At1g32940.1 68414.m04057 subtilase family protein contains simil...    28   4.5  
At4g26420.1 68417.m03802 S-adenosyl-L-methionine:carboxyl methyl...    27   5.9  
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein       27   5.9  
At1g10680.1 68414.m01214 P-glycoprotein, putative similar to P-g...    27   5.9  
At1g35560.1 68414.m04415 TCP family transcription factor, putati...    27   7.8  
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family...    27   7.8  

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score =  237 bits (580), Expect = 3e-63
 Identities = 109/143 (76%), Positives = 123/143 (86%)
 Frame = +3

Query: 36  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 215
           MGK RG+   RK    R  QRWADK++KK+H+G  WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 216 QPNSAIRKCVRVQLINNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 395
           QPNSAIRKC RVQLI NGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 119

Query: 396 KVVKVANVSLLALYKEKKERPRS 464
           KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score =  228 bits (558), Expect = 2e-60
 Identities = 107/143 (74%), Positives = 120/143 (83%)
 Frame = +3

Query: 36  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 215
           MGK RG+   RK    R  QRWADK +KK++ G  WK  PF  +SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAK 59

Query: 216 QPNSAIRKCVRVQLINNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 395
           QPNSAIRKC RVQLI NGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 119

Query: 396 KVVKVANVSLLALYKEKKERPRS 464
           KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142


>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
           protein
          Length = 125

 Score = 34.3 bits (75), Expect = 0.051
 Identities = 24/65 (36%), Positives = 39/65 (60%)
 Frame = +3

Query: 213 KQPNSAIRKCVRVQLINNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVR 392
           K+PNSA RK  +V+L +N   + A +P +G  ++ +E+  VL+ G GR    V D PGV+
Sbjct: 43  KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRG-GR----VKDSPGVK 94

Query: 393 FKVVK 407
              ++
Sbjct: 95  SHCIR 99


>At3g17900.1 68416.m02280 expressed protein
          Length = 838

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 245 NTLTNG*IRLLGFNANFFEDDALSMRCTTEGVRLPSR 135
           N   +G   LL F     E D  S+RC  EG+ +P R
Sbjct: 441 NGQKSGTEELLSFRGVALERDRFSVRCGLEGICIPGR 477


>At1g32960.1 68414.m04059 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
          Length = 777

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 99  WADKEFKKAHMGTRWKANPFGGASHAKG 182
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602


>At1g32940.1 68414.m04057 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 774

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 99  WADKEFKKAHMGTRWKANPFGGASHAKG 182
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599


>At4g26420.1 68417.m03802 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to caffeine
           synthase [Camellia sinensis][GI:9967143],
           defense-related protein cjs1 [Brassica
           carinata][GI:14009292],
           S-adenosyl-L-methionine:salicylic acid carboxyl
           methyltransferase [Clarkia breweri][GI:6002712]
          Length = 619

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 289 TNAVTFLPLLMSCTRTHLRMAEFGCLASTPTFS 191
           T A+  + L   C+ +HL++A+ GC     TFS
Sbjct: 41  TTAINSIKLTEGCS-SHLKIADLGCAIGDNTFS 72


>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
          Length = 356

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 352 PNPATNTSSFSSMWLRQP-SRGTNAVTFLPLLMSCTR 245
           P PA++T SFSS     P S     ++F P L + TR
Sbjct: 300 PKPASSTISFSSSETDNPYSHSEEVISFCPSLSNNTR 336


>At1g10680.1 68414.m01214 P-glycoprotein, putative similar to
           P-glycoprotein GI:4204793 from [Solanum tuberosum]
          Length = 1227

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 24/79 (30%), Positives = 31/79 (39%)
 Frame = -1

Query: 412 ATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAVTFLPLLMSCTRTHLR 233
           A    LN TP +  +  PL   P T T+S     + QP     A   +  L S  R   +
Sbjct: 601 AASPNLNHTPSLPVSTKPLPELPITETTSSIHQSVNQPDTTKQAKVTVGRLYSMIRPDWK 660

Query: 232 MAEFGCLASTPTFSRTMPL 176
               G L S    S+ MPL
Sbjct: 661 YGLCGTLGSFIAGSQ-MPL 678


>At1g35560.1 68414.m04415 TCP family transcription factor, putative
           similar to PCF2 (GI:2580440) and PCF1 (GI:2580438)
           [Oryza sativa]
          Length = 341

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 403 TTLNLTPGMSPTAWPLRPNPATNTSSFSSMWL 308
           +T + T  M P  W L P PA +T+  S+ W+
Sbjct: 212 STRSRTQNMIPPMWALAPTPA-STNGGSAFWM 242


>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 1696

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 409 TLTTLNLTPGMSPTAWP 359
           T TT+N +PG  P +WP
Sbjct: 587 TKTTINTSPGKLPVSWP 603


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,609,787
Number of Sequences: 28952
Number of extensions: 271634
Number of successful extensions: 695
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)