Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G13
(290 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 28 0.32
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 27 0.56
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 25 1.7
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 25 2.2
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 25 2.2
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 25 3.0
SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa... 25 3.0
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 3.0
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 3.0
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 24 3.9
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz... 24 5.2
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 23 6.9
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 23 6.9
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 23 6.9
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 23 6.9
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 23 6.9
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 23 6.9
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 23 9.1
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 23 9.1
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces... 23 9.1
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 23 9.1
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 23 9.1
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c... 23 9.1
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 23 9.1
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 27.9 bits (59), Expect = 0.32
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 192 SKKEDRLPRKKNKHAAKKEDYQARGRRSWKKE 287
++KE+ +KK K KKE+ +A+G+ KK+
Sbjct: 287 ARKEEARLKKKEKERKKKEEMKAQGKYLSKKQ 318
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 27.1 bits (57), Expect = 0.56
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = -3
Query: 267 FRGLDSLLSSRHACFFFEVSDXXXXXXXXXSQEAAAEESFGQHTIISSFFEVSGLLSTAI 88
F L SL H+ FEVS+ + + F S F +SGL +T +
Sbjct: 22 FSNLKSLKHVSHSETDFEVSNDEDNQLLELGYKPVFKREFSTWATFSFAFSISGLFATVV 81
Query: 87 T 85
T
Sbjct: 82 T 82
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.4 bits (53), Expect = 1.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 131 YLLSSRLVVFFLRRLQSSSSTVVIFLP 51
Y L SRLV L SSS ++++FLP
Sbjct: 795 YHLISRLVSSIDAELGSSSGSILVFLP 821
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 2.2
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = +2
Query: 134 MVCWPNDSSAAASCEVYGSVEERRSLTSKKKQACRE 241
M+CWPN S + + + S+T ++ +C++
Sbjct: 42 MMCWPNFDSPSIFARILDARAGHFSITPIEQTSCKQ 77
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 2.2
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 149 NDSSAAASCEVYGSVEERRSLTSK--KKQACREERRLSSPRKKELEKR 286
+D+ A + YGS+EE S K +++ RE + L S + E+ +R
Sbjct: 176 DDAIALLKEDAYGSIEEEESKKRKFEEEEIDREAKSLFSSQDGEIIRR 223
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 24.6 bits (51), Expect = 3.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 210 LPRKKNKHAAKKEDYQARGRRSWKK 284
L RK+++ A +EDY R ++W K
Sbjct: 577 LNRKESRGAHAREDYPERDDKNWIK 601
>SPBC337.15c |coq7||ubiquinone biosynthesis protein
Coq7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 24.6 bits (51), Expect = 3.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 164 QQKSHLANTPSYLLSSRLVVFFLR 93
Q+K HLA +Y+L +R+ FLR
Sbjct: 85 QEKYHLATFDNYVLKNRVRPTFLR 108
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 24.6 bits (51), Expect = 3.0
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 188 SVEERR-SLTSKKKQACREERRLSS 259
S+ ER+ +LT K+K REE +L S
Sbjct: 457 SINERKENLTDKRKSLWREEAKLKS 481
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 24.6 bits (51), Expect = 3.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 182 RLHKKLQQKSHLANTPSYLLSSR 114
+LHK LQ S N P LL SR
Sbjct: 42 KLHKVLQTHSSFVNIPCSLLVSR 64
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 24.2 bits (50), Expect = 3.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 125 EDMMVCWPNDSSAAASCEVYGSVEERRSLTSKKKQACRE 241
E+++VC ++SS C VY E+R+LT + C E
Sbjct: 109 ENLVVCGCSNSS----CIVYSWNAEQRNLTEISRFTCSE 143
>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 23.8 bits (49), Expect = 5.2
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 61 MTTVEEDDCNRRRKKTTNLEERRYDGVLAK*LFCCSFL*SLRECRRKKIAYLEKKT 228
MT+ E +RR++ +E + AK + L + +C++KK++Y + +T
Sbjct: 215 MTSAELASEDRRKEDAKLEQENLFHAQGAKPQKAVTDLFTCGKCKQKKVSYYQMQT 270
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 197 ERRSLTSKKKQACREERRLSSPRKKELEKR 286
+RR+ TS K +A +++ +P L+KR
Sbjct: 329 QRRAETSTKPKAVATPQKVEAPSAPRLQKR 358
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 23.4 bits (48), Expect = 6.9
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = +3
Query: 189 VSKKEDRLPRKKNKHAAKKEDYQARGRRS 275
V +K+D+ P K+ K + + + +G+R+
Sbjct: 56 VHEKKDKKPEKRKKDQKEASEKKKKGKRT 84
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 23.4 bits (48), Expect = 6.9
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +3
Query: 141 VGQMTLLLQLLVKSTGVSKKEDRLPRKKNKHAAKKEDYQARGR 269
+G M L+ L K T K + +KK KH K D+ +
Sbjct: 1329 MGDMLWRLEKLQKKTDNKKPFFKKKKKKRKHLKKFFDFNTTAK 1371
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 23.4 bits (48), Expect = 6.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 131 YLLSSRLVVFFLRRLQSSSSTVV 63
Y+L + L++FF+ SSST++
Sbjct: 514 YILLACLILFFMTLFSRSSSTIL 536
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 23.4 bits (48), Expect = 6.9
Identities = 8/31 (25%), Positives = 20/31 (64%)
Frame = +2
Query: 194 EERRSLTSKKKQACREERRLSSPRKKELEKR 286
++RR KK++ ++ ++ +P+KK+ K+
Sbjct: 202 QQRREENLKKRRESKKSKKGKAPKKKKPSKK 232
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 23.4 bits (48), Expect = 6.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 194 EERRSLTSKKKQACREERRLSSPRKKELEK 283
+ER+ +KK RE+ ++++ + KELEK
Sbjct: 102 KERQQREQEKK--LREQEKIAAKKMKELEK 129
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 23.0 bits (47), Expect = 9.1
Identities = 19/49 (38%), Positives = 22/49 (44%)
Frame = +2
Query: 68 PSKKMTVIAVERRPLTSKKEDMMVCWPNDSSAAASCEVYGSVEERRSLT 214
PSK TV E LTS + V N S A+S GS+ SLT
Sbjct: 69 PSKATTVSLKESASLTSLSNNKSVSNLNSISGASSPS--GSLVNLHSLT 115
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 23.0 bits (47), Expect = 9.1
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 181 LRECRRKKIAYLEKK 225
L E RRKKI LEKK
Sbjct: 307 LDESRRKKIELLEKK 321
>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 129
Score = 23.0 bits (47), Expect = 9.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 287 LFFPTP--SSAGLIVFFLRGMLVFFSR*AIFFLRHSRRL 177
+FF P S L++ F M+ FS+ FFLR R L
Sbjct: 27 MFFDGPLLSLGNLLLVFGFFMIAGFSKSVSFFLRKDRML 65
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 23.0 bits (47), Expect = 9.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 28 KKEDYQACGRKMTTVEEDD 84
K+E Y+A GR+ TT E D+
Sbjct: 8 KEELYKALGREYTTQEFDE 26
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 23.0 bits (47), Expect = 9.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 39 LSSLWKKDDNXXXXXL*SP*KEDH*P 116
L LW+KD N L P ++D P
Sbjct: 186 LEELWRKDPNANLEDLDKPIEDDSLP 211
>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 23.0 bits (47), Expect = 9.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 182 RLHKKLQQKSHLANTPSYLLSSRLVVF 102
+LH KL Q+ + +P Y LS L F
Sbjct: 93 QLHTKLYQQMISSGSPVYSLSQSLPAF 119
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 23.0 bits (47), Expect = 9.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 195 KKEDRLPRKKNKHAAKKEDY 254
K++DRL KKN+ K Y
Sbjct: 100 KEKDRLESKKNERQGKPRSY 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,186,482
Number of Sequences: 5004
Number of extensions: 21578
Number of successful extensions: 107
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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