Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G12
(353 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 27 0.64
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 27 1.1
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 26 1.5
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces... 26 2.0
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 25 2.6
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 25 4.5
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 25 4.5
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 24 6.0
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 24 6.0
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 24 7.9
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.5 bits (58), Expect = 0.64
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 201 GDKNKKKYVQTKAVKRPEGMHREVFALLYNDNKDL 305
G+K K K T +RPEG+ RE+++LL ++ L
Sbjct: 18 GNKQKSK---TPTERRPEGISRELYSLLGENSAPL 49
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 26.6 bits (56), Expect = 1.1
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 165 GTTEISRDSIIHGDKNKKKYVQTKAVKRPEGMHREVFAL-LYNDNK 299
G+ D+I+ D+N+K+ + V P G+ + F L LY +K
Sbjct: 73 GSYRALADNILSTDENRKEDIAVFDVPLPNGLQIDTFTLCLYRKSK 118
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 26.2 bits (55), Expect = 1.5
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = -1
Query: 299 FIIIV*KGKNLSMHPLRPFNSFRLHILLFVFIAMYNTVPTDFSCTRLFYIQYIKNICHDS 120
F +++ +NLSMH PF + + FI + + T RL ++Y N +
Sbjct: 1019 FPVLIVWARNLSMHWSIPFPTHHNFFSIIPFILLTEILRTGKMLPRLNDVEYYIN--NVF 1076
Query: 119 LYLLGYKSQFF 87
L+LL + S +
Sbjct: 1077 LFLLSFYSLIY 1087
>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 2.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 230 LHILLFVFIAMYNTVPTDFSCTRLFYIQYI 141
L++L+ +FI N +P + S R Y+Q +
Sbjct: 279 LNVLIDIFIREINNIPDELSDLRYAYLQVL 308
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 25.4 bits (53), Expect = 2.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 115 IY*VTNHNFFFNTE 74
+Y +TNHN F NTE
Sbjct: 90 VYDITNHNSFVNTE 103
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 24.6 bits (51), Expect = 4.5
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 186 DSIIHGDKNKKKYVQTKAVKRPEGMHREVFALLYNDNKDLPPLLPTD 326
+S + + K Y ++ P G +R L+ +K LP LP D
Sbjct: 94 NSFLPFNNPKDDYKTRITLRSPSGSYRGSVVCLFKRSKFLPEELPAD 140
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 24.6 bits (51), Expect = 4.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 21 DSSVTLPVISFEYYNSNYS 77
D+ VT+P+I YYN +S
Sbjct: 91 DAGVTIPIILMGYYNPIFS 109
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 24.2 bits (50), Expect = 6.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -1
Query: 131 CHDSLYLLGYKSQFFF 84
C D YLLG+ ++ F+
Sbjct: 481 CDDDFYLLGFNAEMFY 496
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 24.2 bits (50), Expect = 6.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 340 YPFPVSVGSNGGKSLLSLYRRAKTSRCIPS 251
YP+P+ + LLS+YR + PS
Sbjct: 250 YPYPLDASHLSSQQLLSMYRDQVSHGVTPS 279
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 147 VYQEYLP*FTLFIRLQITIFFSI 79
V QEY P FTLF LQ + +
Sbjct: 326 VLQEYSPKFTLFSLLQTVLTLDV 348
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,507,466
Number of Sequences: 5004
Number of extensions: 29095
Number of successful extensions: 76
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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