Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G12
         (353 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0973 - 8193002-8193261,8193388-8193485,8194117-8194401,819...    29   1.4  
07_03_0847 + 21989880-21990131                                         28   2.4  
02_04_0159 - 20416943-20416962,20417099-20417285                       28   2.4  
05_06_0244 + 26643193-26643306,26643398-26643493,26643819-266438...    27   4.2  
06_03_0430 - 20710951-20711033,20711572-20712055                       27   5.6  
03_05_0746 + 27352120-27352200,27354017-27354199                       27   5.6  

>07_01_0973 -
           8193002-8193261,8193388-8193485,8194117-8194401,
           8195559-8195773,8196549-8197058
          Length = 455

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -3

Query: 279 GQKPLD---ASPPAF*QLSFAHTSFCFYRHV*YCPY*FQLYQAVLYPVYQE 136
           G++PL     +PP+F +  FA   +CFY +   CP  + +Y+    P  ++
Sbjct: 302 GREPLTDKARAPPSFDKRKFAICMYCFYAYY-KCPIRYPIYRIPTGPTLKD 351


>07_03_0847 + 21989880-21990131
          Length = 83

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 349 VCLYPFPVSVGSNG-GKSLLSLYRRAKTSRCIPSGLLTAFVCTY 221
           +  Y FP+S+ +NG G SLL L +  + +  IP+G    F CT+
Sbjct: 39  IAWYKFPLSLFTNGKGLSLLKL-KLGQCTLSIPTG-FDGFKCTF 80


>02_04_0159 - 20416943-20416962,20417099-20417285
          Length = 68

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -3

Query: 120 TLFIRLQITIFFSILNNYYCN 58
           TL+++ Q+T++ S  ++YYCN
Sbjct: 6   TLWLQAQLTVYASPCSSYYCN 26


>05_06_0244 +
           26643193-26643306,26643398-26643493,26643819-26643884,
           26643965-26644024,26644108-26644164,26644464-26644593,
           26645114-26645181,26645276-26645368,26645473-26645520,
           26645882-26646019,26646738-26646833,26647979-26648050,
           26648928-26648982,26649078-26649112,26649808-26649963
          Length = 427

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 207 KNKKKYVQTKAVKRPEGMHREVFALLYNDNKDLPPLLPT 323
           + KK     +  ++P+G+ REV+AL       + PL+PT
Sbjct: 18  QEKKPRAPKEPQRKPDGVSREVYAL--TGGVGMAPLMPT 54


>06_03_0430 - 20710951-20711033,20711572-20712055
          Length = 188

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 300 DLPPLLPTDTGKGYKQTK 353
           DLPPLLPT  G   K+ K
Sbjct: 79  DLPPLLPTPQGPKLKEAK 96


>03_05_0746 + 27352120-27352200,27354017-27354199
          Length = 87

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +3

Query: 216 KKYVQTKAVKRPEGMHREVFALLYNDNK 299
           K+ +Q    K+P+G ++  F +++ND++
Sbjct: 11  KEEIQRLGQKQPDGSYKVTFGVIFNDDR 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,096,831
Number of Sequences: 37544
Number of extensions: 163843
Number of successful extensions: 339
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)