Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G12
         (353 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13359| Best HMM Match : DMAP1 (HMM E-Value=0)                       74   3e-14
SB_28497| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   5e-13
SB_19955| Best HMM Match : AFP (HMM E-Value=0.14)                      31   0.36 
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     29   1.1  
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   4.4  
SB_29767| Best HMM Match : Diphtheria_R (HMM E-Value=6)                27   4.4  
SB_45922| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.7  

>SB_13359| Best HMM Match : DMAP1 (HMM E-Value=0)
          Length = 535

 Score = 74.1 bits (174), Expect = 3e-14
 Identities = 33/56 (58%), Positives = 40/56 (71%)
 Frame = +3

Query: 186 DSIIHGDKNKKKYVQTKAVKRPEGMHREVFALLYNDNKDLPPLLPTDTGKGYKQTK 353
           DS ++    K K V  + +KRPEGMHRE+FALLYNDN+D P L P+DT  GYKQ K
Sbjct: 118 DSAVNRQPKKPKRVSEQPLKRPEGMHRELFALLYNDNRDSPSLAPSDTTHGYKQLK 173


>SB_28497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 70.1 bits (164), Expect = 5e-13
 Identities = 31/47 (65%), Positives = 36/47 (76%)
 Frame = +3

Query: 213 KKKYVQTKAVKRPEGMHREVFALLYNDNKDLPPLLPTDTGKGYKQTK 353
           K K V  + +KRPEGMHRE+FALLYNDN+D P L P+DT  GYKQ K
Sbjct: 4   KPKRVSEQPLKRPEGMHRELFALLYNDNRDSPSLAPSDTTHGYKQLK 50


>SB_19955| Best HMM Match : AFP (HMM E-Value=0.14)
          Length = 691

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 198 HGDKNKKKYVQTKAVKRPEGMHREVFALLYNDNKDLPPLLPTDTG 332
           +  ++K+K +QT   K  + +   +  +  +D  DLPP++P  TG
Sbjct: 32  NAQQDKRKQLQTSKKKTGDDLSDIIRDICEDDGPDLPPVVPPPTG 76


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 231 FAHTSFCFYRHV*YCPY*FQLYQAVLYPVYQEY 133
           + H  +C+YRH  YC Y    +    YP Y+ Y
Sbjct: 25  YCHHRYCYYRHHHYCWYRHHYH----YPCYRHY 53


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 124  SWQIFLIYWI*NSLVQLKSVGTVLYMAIKTKRSMCKRKLLKG 249
            SWQ+F  +    SLVQ+K +G +       K  + ++  LKG
Sbjct: 2813 SWQLFEEHTNQASLVQVKHIGNISATGTNQKFIVLRKDTLKG 2854


>SB_29767| Best HMM Match : Diphtheria_R (HMM E-Value=6)
          Length = 406

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 218 LFVFIAMYNTVPTDFSCTRLFYIQYIKNICHDSLYLLGYKSQFFFQY*IITIVI 57
           L  ++     VP +++   L  +Q ++NI  D L+ LG+K Q    Y  IT+ +
Sbjct: 151 LLFYLGHKGQVPKNYTHITL-PVQLLRNINKDLLFYLGHKGQVRKSYTHITLPV 203



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 218 LFVFIAMYNTVPTDFSCTRLFYIQYIKNICHDSLYLLGYKSQFFFQY*IITIVI 57
           L  ++     VP +++   L  +Q ++NI  D L+ LG+K Q    Y  IT+ +
Sbjct: 213 LLFYLGHKGQVPKNYTHITL-PVQLLRNINKDLLFYLGHKGQVRKSYTHITLPV 265



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -1

Query: 218 LFVFIAMYNTVPTDFSCTRLFYIQYIKNICHDSLYLLGYKSQFFFQY*IITIVI 57
           L  ++     +P  ++   L  +Q ++NI  D L+ LG+K Q    Y  IT+ +
Sbjct: 89  LLFYLGHQGQIPKSYTHITL-PVQLLRNINKDLLFYLGHKGQVRKSYTHITLPV 141



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -1

Query: 218 LFVFIAMYNTVPTDFSCTRLFYIQYIKNICHDSLYLLGYKSQFFFQY*IITIVI 57
           L  ++     VP  ++   L  +Q ++NI  D L+ LG+K Q    Y  IT+ +
Sbjct: 27  LLFYLGHKGQVPKSYTHITL-PVQLLRNINKDLLFYLGHKGQVPKSYTHITLPV 79



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -1

Query: 218 LFVFIAMYNTVPTDFSCTRLFYIQYIKNICHDSLYLLGYKSQFFFQY*IITIVI 57
           L  ++     VP  ++   L  +Q ++NI  D L+ LG+K Q    Y  IT+ +
Sbjct: 275 LLFYLGHKGQVPKSYTHITL-PVQLLRNINKDLLFYLGHKGQVPKSYTHITLPV 327


>SB_45922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -1

Query: 218 LFVFIAMYNTVPTDFSCTRLFYIQYIKNICHDSLYLLGYKSQFFFQY*IITIVI 57
           L  ++     VP  ++   L  +Q ++NI  D L+ LG+K Q    Y  IT+ +
Sbjct: 27  LLFYLGHKGQVPKSYTHITL-PVQLLRNINKDLLFYLGHKGQVPKSYTHITLPV 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,985,339
Number of Sequences: 59808
Number of extensions: 204109
Number of successful extensions: 460
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)