Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G12
(353 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-14|CAD21666.1| 486|Caenorhabditis elegans Hypothetical... 42 2e-04
U23452-6|AAK31544.3| 280|Caenorhabditis elegans Hypothetical pr... 27 2.8
Z81134-7|CAD56602.1| 879|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z81134-6|CAB03450.2| 795|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 26 6.6
U56963-3|AAP31428.1| 312|Caenorhabditis elegans Serpentine rece... 26 6.6
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 26 6.6
AL117202-32|CAD56611.1| 879|Caenorhabditis elegans Hypothetical... 26 6.6
AL117202-31|CAD56610.1| 795|Caenorhabditis elegans Hypothetical... 26 6.6
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p... 26 8.7
U49946-5|AAX55699.1| 919|Caenorhabditis elegans Diacylglycerol ... 26 8.7
U49946-4|AAC48135.1| 952|Caenorhabditis elegans Diacylglycerol ... 26 8.7
U49946-2|AAC48134.1| 950|Caenorhabditis elegans Diacylglycerol ... 26 8.7
U00052-8|AAK21421.2| 707|Caenorhabditis elegans Hypothetical pr... 26 8.7
AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear recep... 26 8.7
AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormo... 26 8.7
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 26 8.7
AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormo... 26 8.7
>AL132876-14|CAD21666.1| 486|Caenorhabditis elegans Hypothetical
protein Y105E8A.17 protein.
Length = 486
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +3
Query: 231 TKAVKRPEGMHREVFALLYNDNKDLPPLLPTDTGKGYKQ 347
T A ++PEGM RE+F L+ KDL ++PTD K YKQ
Sbjct: 27 TSAPRKPEGMKRELFNLM--SGKDLTAVMPTDVKKTYKQ 63
>U23452-6|AAK31544.3| 280|Caenorhabditis elegans Hypothetical
protein R07G3.2 protein.
Length = 280
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 352 FVCLYPFPVSVGSNGGKSLLSLYRRAKTSR 263
F+C PFP + N G S +S Y + SR
Sbjct: 186 FLCALPFPGACNMNNGLSCMSAYIKDINSR 215
>Z81134-7|CAD56602.1| 879|Caenorhabditis elegans Hypothetical
protein T28D6.5b protein.
Length = 879
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 255 GMHREVFALLYNDNKDLPPLLPTDTGKGYKQ 347
G + LL +D DLP ++ TGK Y++
Sbjct: 592 GKYAPPMVLLQSDTPDLPLVMQNHTGKRYEE 622
>Z81134-6|CAB03450.2| 795|Caenorhabditis elegans Hypothetical
protein T28D6.5a protein.
Length = 795
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 255 GMHREVFALLYNDNKDLPPLLPTDTGKGYKQ 347
G + LL +D DLP ++ TGK Y++
Sbjct: 592 GKYAPPMVLLQSDTPDLPLVMQNHTGKRYEE 622
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
F15D4.7 protein.
Length = 2268
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +3
Query: 204 DKNKKKYVQTKAVKRPEGMHREVFALLYNDNKDLPPLLPTDTGKGYK 344
DKN+ Y+ +++ KR + MH + + N +++ + D K +K
Sbjct: 1283 DKNQIPYLISESKKRFQDMHMNLREYITNVGEEMDKISEKDKAKDHK 1329
>U56963-3|AAP31428.1| 312|Caenorhabditis elegans Serpentine
receptor, class v protein28 protein.
Length = 312
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 124 SWQIFLIYWI*NSLVQL 174
+WQI L+YWI +L+ L
Sbjct: 132 TWQIVLVYWIVPTLISL 148
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +3
Query: 204 DKNKKKYVQTKAVKRPEGMHREVFALLYNDNKDLPPLLPTDTGKGYK 344
DKN+ Y+ +++ KR + MH + + N +++ + D K +K
Sbjct: 1283 DKNQIPYLISESKKRFQDMHMNLREYITNVGEEMDKISEKDKAKDHK 1329
>AL117202-32|CAD56611.1| 879|Caenorhabditis elegans Hypothetical
protein T28D6.5b protein.
Length = 879
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 255 GMHREVFALLYNDNKDLPPLLPTDTGKGYKQ 347
G + LL +D DLP ++ TGK Y++
Sbjct: 592 GKYAPPMVLLQSDTPDLPLVMQNHTGKRYEE 622
>AL117202-31|CAD56610.1| 795|Caenorhabditis elegans Hypothetical
protein T28D6.5a protein.
Length = 795
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 255 GMHREVFALLYNDNKDLPPLLPTDTGKGYKQ 347
G + LL +D DLP ++ TGK Y++
Sbjct: 592 GKYAPPMVLLQSDTPDLPLVMQNHTGKRYEE 622
>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 259 CIERFLPFYTMIIKIYLHCY 318
CI F+ F+ + YLHCY
Sbjct: 180 CIAFFIWFFCCAFETYLHCY 199
>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 259 CIERFLPFYTMIIKIYLHCY 318
CI F+ F+ + YLHCY
Sbjct: 180 CIAFFIWFFCCAFETYLHCY 199
>U49946-5|AAX55699.1| 919|Caenorhabditis elegans Diacylglycerol
kinase protein 1,isoform e protein.
Length = 919
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 225 VQTKAVKRPEGMHREVFALLYND-NKD 302
V + VKRPEG ++F Y+D +KD
Sbjct: 298 VPLRNVKRPEGKRAQIFIRYYDDPDKD 324
>U49946-4|AAC48135.1| 952|Caenorhabditis elegans Diacylglycerol
kinase protein 1,isoform b protein.
Length = 952
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 225 VQTKAVKRPEGMHREVFALLYND-NKD 302
V + VKRPEG ++F Y+D +KD
Sbjct: 331 VPLRNVKRPEGKRAQIFIRYYDDPDKD 357
>U49946-2|AAC48134.1| 950|Caenorhabditis elegans Diacylglycerol
kinase protein 1,isoform a protein.
Length = 950
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 225 VQTKAVKRPEGMHREVFALLYND-NKD 302
V + VKRPEG ++F Y+D +KD
Sbjct: 329 VPLRNVKRPEGKRAQIFIRYYDDPDKD 355
>U00052-8|AAK21421.2| 707|Caenorhabditis elegans Hypothetical
protein K02F3.2 protein.
Length = 707
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +1
Query: 238 LLKGRRGCIERFLPFYTMIIKIYLHCYQLTQERD 339
L KG R C R +PF + Y H + + D
Sbjct: 523 LYKGSRACFLRDIPFSAIYFPAYAHAKLASADED 556
>AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear receptor
NHR-88 protein.
Length = 598
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 227 HILLFVFIAMYNTVPTDFSCTRLFYIQYIKN 135
HI + + I+M DF + LF+ QY++N
Sbjct: 176 HITMPIGISMMMKNDPDFDVSTLFHSQYVRN 206
>AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform c protein.
Length = 235
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 227 HILLFVFIAMYNTVPTDFSCTRLFYIQYIKN 135
HI + + I+M DF + LF+ QY++N
Sbjct: 171 HITMPIGISMMMKNDPDFDVSTLFHSQYVRN 201
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 227 HILLFVFIAMYNTVPTDFSCTRLFYIQYIKN 135
HI + + I+M DF + LF+ QY++N
Sbjct: 171 HITMPIGISMMMKNDPDFDVSTLFHSQYVRN 201
>AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform a protein.
Length = 593
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 227 HILLFVFIAMYNTVPTDFSCTRLFYIQYIKN 135
HI + + I+M DF + LF+ QY++N
Sbjct: 171 HITMPIGISMMMKNDPDFDVSTLFHSQYVRN 201
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,325,278
Number of Sequences: 27780
Number of extensions: 164324
Number of successful extensions: 392
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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