Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G12
         (353 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   2.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   7.5  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    20   7.5  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    20   9.9  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    20   9.9  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    20   9.9  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    20   9.9  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    20   9.9  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    20   9.9  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    20   9.9  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    20   9.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   9.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 294 YHCIEGQKPLDASPP 250
           Y C++G+ P D  PP
Sbjct: 428 YFCLDGKLPHDDQPP 442


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 174 EISRDSIIHGDKNKKKYVQTKAVKRPEGMHREVFALLYNDNKD 302
           E+  D    GD +    V+    K  EGM  +VF +   D  D
Sbjct: 388 EVDEDDDDDGDDDDDDDVEAANGKPAEGMLTDVFHVQETDKYD 430


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +2

Query: 77  SIEKKIVICNLINKVNHGRYS 139
           ++EK +++CNL+  +N  + S
Sbjct: 447 TLEKFMILCNLMRTMNRKQIS 467


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 177 FQLYQAVLYPVYQEYLP 127
           F+L + + Y V+Q YLP
Sbjct: 235 FKLQRNIGYFVFQTYLP 251


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 48  SFEYYNSNYSVLKKKL 95
           ++  YN+NY+   KKL
Sbjct: 93  NYNNYNNNYNNYNKKL 108


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 48  SFEYYNSNYSVLKKKL 95
           ++  YN+NY+   KKL
Sbjct: 93  NYNNYNNNYNTNYKKL 108


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 48  SFEYYNSNYSVLKKKL 95
           ++  YN+NY+   KKL
Sbjct: 93  NYNNYNNNYNTNYKKL 108


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 48  SFEYYNSNYSVLKKKL 95
           ++  YN+NY+   KKL
Sbjct: 93  NYNNYNNNYNTNYKKL 108


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 48  SFEYYNSNYSVLKKKL 95
           ++  YN+NY+   KKL
Sbjct: 93  NYNNYNNNYNTNYKKL 108


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 48  SFEYYNSNYSVLKKKL 95
           ++  YN+NY+   KKL
Sbjct: 93  NYNNYNNNYNTNYKKL 108


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 48  SFEYYNSNYSVLKKKL 95
           ++  YN+NY+   KKL
Sbjct: 93  NYNNYNNNYNTNYKKL 108


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 48  SFEYYNSNYSVLKKKL 95
           ++  YN+NY+   KKL
Sbjct: 97  NYNNYNNNYNTNYKKL 112


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 48  SFEYYNSNYSVLKKKL 95
           ++  YN+NY+   KKL
Sbjct: 93  NYNNYNNNYNTNYKKL 108


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 219 KYVQTKAVKRPEGMHR 266
           K V +KAV R  G+H+
Sbjct: 489 KLVDSKAVSRLWGLHK 504


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,398
Number of Sequences: 438
Number of extensions: 2319
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)