Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G12
         (353 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29830.1 68416.m03796 F-box family protein contains Pfam:PF00...    27   2.7  
At2g41830.1 68415.m05169 cyclin-related contains Pfam profile PF...    27   3.6  
At5g27000.1 68418.m03221 kinesin motor protein-related non-conse...    26   6.3  
At2g47210.1 68415.m05896 myb family transcription factor contain...    26   6.3  
At3g07195.1 68416.m00858 proline-rich family protein                   26   8.3  

>At3g29830.1 68416.m03796 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 464

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -2

Query: 349 VCLYPFPVSVGSNGGKSLLSLYRRAKTSRCI 257
           +CL PFP++  S+GG S  +L+    +SRC+
Sbjct: 363 LCLKPFPMA--SHGGSSSHTLWLENISSRCL 391


>At2g41830.1 68415.m05169 cyclin-related contains Pfam profile
           PF02984: Cyclin, C-terminal domain
          Length = 1025

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 178 SVGTVLYMAIKTKRSMCKRKLLKGRRGCIERFLP 279
           S GT++Y  +K+   MC  ++ K R   +  F+P
Sbjct: 791 SRGTLVYEIVKSLEDMCNSEMDKMREQLLTEFMP 824


>At5g27000.1 68418.m03221 kinesin motor protein-related
           non-consensus AT donor splice site at exon 12;
           non-consensus AC acceptor splice site at exon 13
          Length = 987

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 92  IVICNLINKVNHGRYS 139
           IV+CN++NKVN G  S
Sbjct: 83  IVLCNVLNKVNPGSVS 98


>At2g47210.1 68415.m05896 myb family transcription factor contains
           Pfam profile: PF00249 myb DNA-binding domain
          Length = 441

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 207 KNKKKYVQTKAVKRPEGMHREVFALLYNDNKDLPPLLPT 323
           + KK   Q ++ ++P+G+ REV+AL       + PL+P+
Sbjct: 21  QEKKSRPQKESHRKPDGISREVYAL----TGGVAPLMPS 55


>At3g07195.1 68416.m00858 proline-rich family protein
          Length = 225

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 337 PFPVSVGSNGGKSLLSLYRRAKTSR 263
           PFP SVG+ G  S   ++ + K  R
Sbjct: 154 PFPGSVGAGGDMSYTQIFEKVKEER 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,608,174
Number of Sequences: 28952
Number of extensions: 142696
Number of successful extensions: 353
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)