Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G11
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    97   9e-22
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    28   0.36 
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    26   1.5  
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces...    24   5.9  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 96.7 bits (230), Expect = 9e-22
 Identities = 47/80 (58%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
 Frame = +1

Query: 40  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADSSK-MYVVCGAI 216
           M+N+AG+ VDLY PRKCSA+NR+I AKDHASVQ+ +  VD A GR     K  Y + G +
Sbjct: 1   MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISGFV 59

Query: 217 RRMGESDDCIVRLTKKDGIL 276
           R  GESDDCI RLT +DG+L
Sbjct: 60  RSKGESDDCINRLTTQDGLL 79


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 28.3 bits (60), Expect = 0.36
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 270 PVFLSEPDYAVVGLSHPANGSTDHVHLGGVSSTSGCR 160
           P+++S+P    VG++HP N ++D    GG      CR
Sbjct: 397 PMYVSQPSNNAVGVNHP-NDNSDSEAKGGFFDMICCR 432


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 154 RPLSRAAPMRGPSHGSDDYSPSISLGS 74
           +P  R+     PS+  +D+ PS SLGS
Sbjct: 407 QPQGRSPNEHSPSNHPEDFPPSFSLGS 433


>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 276

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 150 RYHELHRCVVLRMDQTITRRAFPWAVQVNEFTSVVLHFV 34
           ++HEL+RC+V  +D        P      E  S VL ++
Sbjct: 211 KFHELNRCIVQLIDDFNMVNFLPLESGNEESVSRVLSYI 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,432,687
Number of Sequences: 5004
Number of extensions: 26432
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)