Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G11
         (347 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...   112   6e-26
U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical p...    29   1.2  
Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    28   2.1  
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        28   2.1  
Z81109-2|CAB03244.1|  408|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    26   6.4  
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    26   6.4  
Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    26   8.5  
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical...    26   8.5  
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ...    26   8.5  

>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 21 protein.
          Length = 88

 Score =  112 bits (270), Expect = 6e-26
 Identities = 52/83 (62%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
 Frame = +1

Query: 40  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADSSKMYVVCGAI 216
           MQNDAG+ V+LY PRKCS+SNR+I  KDHASVQ+   DVDP TGR     S  Y +CGAI
Sbjct: 1   MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAI 60

Query: 217 RRMGESDDCIVRLTKKDGILAKN 285
           RRMGESDD I+RL +KDG++ ++
Sbjct: 61  RRMGESDDAILRLAQKDGLVPRD 83


>U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical
           protein F26A1.12 protein.
          Length = 231

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 196 TSWRSQQHVRLQGPRPLSRAAPMRGPSHGSDDYSPSISLGSTSQRIHQRRSAFCV 32
           +S   + H    GPRP     P R P       +P+ S       IH+RR  +C+
Sbjct: 35  SSGEGRGHHHKHGPRPPRPNRPPRPPPATPPPTTPAPSCPGGWSLIHRRRGPWCI 89


>Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical
           protein T25E12.4b protein.
          Length = 220

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 154 VDPATGRAADSSKMYVVCGAIRRMGESDDCIVRLTKKDG 270
           V  + G  + SS   +   A R +G + DC+V +TK++G
Sbjct: 123 VADSEGAGSYSSFSSIASTASRMLGRAADCLVLMTKRNG 161


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 136 APMRG-PSHGSDDYSPSI-SLG-STSQRIHQRRSAFCVSKLH 20
           APM G P +    Y P + S G  T  RIH +  AFC+S  H
Sbjct: 865 APMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFH 906


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 136 APMRG-PSHGSDDYSPSI-SLG-STSQRIHQRRSAFCVSKLH 20
           APM G P +    Y P + S G  T  RIH +  AFC+S  H
Sbjct: 740 APMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFH 781


>Z81109-2|CAB03244.1|  408|Caenorhabditis elegans Hypothetical
           protein R10D12.2 protein.
          Length = 408

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 113 WIRRLLAEHFLGQYKSTNSPASFCILC 33
           WI  +L    L  Y  TN  A  C++C
Sbjct: 30  WINLILVSFTLNNYDQTNEVARTCLVC 56


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = -1

Query: 209 PQTTYILEESAARPVAGSTSAITSCTDAWSFAWIRRLLAEHFLGQYKSTNSPASFCIL 36
           PQ+ +    S      GS S    C  AW   WI+    E  + + +  N+ ++  +L
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLL 849


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = -1

Query: 209 PQTTYILEESAARPVAGSTSAITSCTDAWSFAWIRRLLAEHFLGQYKSTNSPASFCIL 36
           PQ+ +    S      GS S    C  AW   WI+    E  + + +  N+ ++  +L
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLL 849


>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 125 WSFAWIRRLLAEHFLGQYKS 66
           W+ AW+RR++ E   G Y++
Sbjct: 359 WTVAWLRRVVYERVEGPYRT 378


>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
           protein Y18D10A.13 protein.
          Length = 2417

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -3

Query: 138 LHRC--VVLRMDQTITRRAFPWAV 73
           L RC  VVLR D ++ RR + W +
Sbjct: 276 LRRCLFVVLRRDMSLNRRLYTWLI 299


>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 2417

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -3

Query: 138 LHRC--VVLRMDQTITRRAFPWAV 73
           L RC  VVLR D ++ RR + W +
Sbjct: 276 LRRCLFVVLRRDMSLNRRLYTWLI 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,150,276
Number of Sequences: 27780
Number of extensions: 159782
Number of successful extensions: 555
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)