Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G11
         (347 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   2.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   3.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   4.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 320 VISFLCDCALQ*FLASIPSFLVSLTMQSSDSP 225
           V +F+  C +  F+A +   LV++ +  SD+P
Sbjct: 307 VDAFMSVCTVFVFMALMEYCLVNIVLGDSDTP 338


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 169  GRAADSSKMYVVCGAIRRMGESD 237
            GR  +S+K YVV   +   GES+
Sbjct: 1182 GRGIESAKSYVVDVRVHVPGESE 1204


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 167 VAGSTSAITSCTDAWSFAWI 108
           VAG   A+  C    +F+WI
Sbjct: 354 VAGVMRAVKRCNATGAFSWI 373


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 157 PRPLSRAAPMRGPSHGSDDYSPSISLGSTSQRIHQ 53
           P P S+  P  GP       +PS  + S +  IHQ
Sbjct: 40  PNP-SQGPPPGGPPGAPPSQNPSQMMISPASGIHQ 73


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +2

Query: 194 CTWSVEPFAGW 226
           CTW+  P+ G+
Sbjct: 301 CTWAARPWQGY 311


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +2

Query: 194 CTWSVEPFAGW 226
           CTW+  P+ G+
Sbjct: 301 CTWAARPWQGY 311


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +2

Query: 194 CTWSVEPFAGW 226
           CTW+  P+ G+
Sbjct: 301 CTWAARPWQGY 311


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 37  KMQNDAGEFVDLYC 78
           K+  +AGEF +L C
Sbjct: 592 KLPMNAGEFANLQC 605



 Score = 19.8 bits (39), Expect = 9.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 179  AARPVAGSTSAITSCTDAWS 120
            AAR +  +T++IT   +AWS
Sbjct: 1466 AARFIEVATNSITLHLNAWS 1485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,828
Number of Sequences: 438
Number of extensions: 1743
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)