Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G10
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0105 - 41104655-41104851,41105818-41107150                       32   0.29 
11_08_0022 + 27733247-27733935,27735722-27735981,27736213-277364...    31   0.51 
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312     29   2.7  
10_06_0008 - 9533424-9533475,9533526-9535344,9535599-9536364,955...    27   8.4  
09_06_0035 - 20375009-20375080,20375290-20375379,20376582-203766...    27   8.4  

>01_07_0105 - 41104655-41104851,41105818-41107150
          Length = 509

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 303 EKCTDAQKHIFK-RFLEALKEKLPAEYEAFKNKYDPEGKHFAALEAAV 443
           EK TDA+  +     + A+ EK+ AE +  KNK D E    A +EAAV
Sbjct: 181 EKITDAKNDVASTENVAAVDEKIKAEEDKNKNKNDDEVVATATMEAAV 228


>11_08_0022 +
           27733247-27733935,27735722-27735981,27736213-27736404,
           27737695-27738686
          Length = 710

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +3

Query: 177 EAVANDQSTLEEFVKCFLDSVKCNPVAGDFKKDI--AEAVQQSCEKCTDAQKHIFKRFLE 350
           +AV + +S   EF  C+ D    N     + +DI  AEA+Q  C +C D    I  + LE
Sbjct: 628 KAVYDGKSLPIEFTNCYEDD---NARRNMYDQDILSAEALQPHCMECLDRMAGIAVQCLE 684

Query: 351 ALKEKLPAEYEAFK 392
              +K P   EA +
Sbjct: 685 YNIDKRPTMAEALQ 698


>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
          Length = 232

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 412 PSGSYLFLNASYSAGNFSFKASRK-RLKICFWASVH 308
           P G+ L  + +  +GNF+F AS       CFWA  H
Sbjct: 93  PYGNSLHYSENVQSGNFAFTASEAGDYLACFWAPDH 128


>10_06_0008 -
           9533424-9533475,9533526-9535344,9535599-9536364,
           9551969-9552097
          Length = 921

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = -1

Query: 201 LTGHWQQPQYLNH-HSQSYTSP*RTHSPKPPDTERKCTSSLRVSRYLVM*VCNHTYHSPI 25
           +TG   QP+  NH H  +   P     P PPDT    T  L     ++    +H  + P 
Sbjct: 320 VTGDGNQPEGSNHNHQGNPPPPPPPPPPPPPDTNAILTQILAQQANMMNAFLHHLQNPPQ 379

Query: 24  CSRP 13
            + P
Sbjct: 380 HNAP 383


>09_06_0035 -
           20375009-20375080,20375290-20375379,20376582-20376684,
           20376784-20376864,20376966-20377192
          Length = 190

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 261 DFKKDIAE---AVQQSCEKCTDAQKHIFKRFLEALKEKLPAEYEAFK 392
           +F +D+     A  Q  +  TDA K + K  LE L++  P + EA++
Sbjct: 113 EFTRDVLNSCIAKNQVTKGKTDAFKSLRKHLLEELEQAFPEDVEAYR 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,968,068
Number of Sequences: 37544
Number of extensions: 251785
Number of successful extensions: 760
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)