Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G10
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26152| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.13 
SB_30706| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_41006| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_54104| Best HMM Match : PolyA_pol (HMM E-Value=1.29998e-41)         27   6.5  
SB_49976| Best HMM Match : SEC-C (HMM E-Value=0.95)                    27   6.5  
SB_28798| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_26152| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1380

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 22/68 (32%), Positives = 35/68 (51%)
 Frame = +3

Query: 138  KEKYTTENDDLDIEAVANDQSTLEEFVKCFLDSVKCNPVAGDFKKDIAEAVQQSCEKCTD 317
            K++ +  ++D ++  VA    TL E V   L S +  P++ +   D ++  QQ   KCT 
Sbjct: 873  KDRVSKNDNDANLATVAGVVHTLNEGVDRELPSDRTTPMSTN-DGDTSKENQQLFHKCTQ 931

Query: 318  AQKHIFKR 341
            AQK   KR
Sbjct: 932  AQKKKAKR 939


>SB_30706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 41  VWLQTYITRYLDTRKDEVHLRSVS 112
           V L+  ITRYLD R+ E H + VS
Sbjct: 42  VLLRQEITRYLDRRRSEQHTKEVS 65


>SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
 Frame = -3

Query: 295 CCTASAISFLKSPATGLHLTESRKHLTNS---SRVDWSLATASISKSSFSVVYFSLAYTL 125
           C T    S+    ++  H+T S  H+T+S       ++ AT+S + ++ S  + + +Y  
Sbjct: 53  CYTHVTTSYAHVTSSHAHVTSSHAHVTSSYTHVTTSYAHATSSYAHATSSFAHVTSSYAH 112

Query: 124 AKTTRHRT*MHFIFASV*VSCNVSLQPHVSQSY 26
           A ++       +  A+   +   S   HV+ SY
Sbjct: 113 ATSSFAHVTSSYAHATSSFAHVTSSHAHVTSSY 145


>SB_41006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 230 RFRQM*SCGWRFQKGYCGGCTTIMRKVHRCPET 328
           R  Q  S  WR  +  CGG  T+  + H+ P+T
Sbjct: 335 RVMQTASSPWRSDRNSCGGSFTVHLQRHKRPDT 367


>SB_54104| Best HMM Match : PolyA_pol (HMM E-Value=1.29998e-41)
          Length = 466

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +1

Query: 187 PMTSQLLKSSLNAFSIPSNVILWLEISKRILRRLYNNHAKSAQMPRNISSNVSLKL*KKN 366
           P T  ++K       I S   +WLE+SK IL   +  H         I+SN+ L     +
Sbjct: 244 PDTLAVIKELAEGLRIISVERIWLEVSK-ILIGNHAQHLLQMLYDLGIASNIGLPTYDAS 302

Query: 367 CLRNMKRS 390
           C+    R+
Sbjct: 303 CMTEFHRA 310


>SB_49976| Best HMM Match : SEC-C (HMM E-Value=0.95)
          Length = 1037

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 135 AKEKYTTENDDLDIEAVANDQSTLEEFVKCFLDSVKCNP 251
           A+  +T  + +L  + +A D++ + + V CF   +  NP
Sbjct: 810 AQSDHTHSHKELSSKRIARDEADVNKLVNCFASGLMNNP 848


>SB_28798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 135 AKEKYTTENDDLDIEAVANDQSTLEEFVKCFLDSVKCNP 251
           A+  +T  + +L  + +A D++ + + V CF   +  NP
Sbjct: 50  AQSDHTHSHKELSSKRIARDEADVNKLVNCFASGLMNNP 88


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/63 (22%), Positives = 26/63 (41%)
 Frame = +3

Query: 216  VKCFLDSVKCNPVAGDFKKDIAEAVQQSCEKCTDAQKHIFKRFLEALKEKLPAEYEAFKN 395
            +K +LDS+          + + EA +   ++     +H+     +   E LP E E  +N
Sbjct: 5471 IKRYLDSINREKQGSSLHRSLEEARKVFVQQGRPDAQHVLVIMTDGQSESLPDEIETARN 5530

Query: 396  KYD 404
              D
Sbjct: 5531 PLD 5533


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,514,552
Number of Sequences: 59808
Number of extensions: 312377
Number of successful extensions: 1591
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)