Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G10
(498 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC117178-1|AAI17179.1| 1332|Homo sapiens NPC1L1 protein protein. 30 3.9
AY515256-1|AAS56939.1| 1332|Homo sapiens NPC1L1 splice variant p... 30 3.9
AY437865-1|AAR97886.1| 1332|Homo sapiens Niemann-Pick C1-like 1 ... 30 3.9
AF192523-1|AAF20397.1| 724|Homo sapiens truncated Niemann-Pick ... 30 3.9
AF192522-1|AAF20396.1| 1359|Homo sapiens Niemann-Pick C1-like pr... 30 3.9
X03178-1|CAA26938.1| 474|Homo sapiens protein ( Human mRNA for ... 29 9.0
S67480-1|AAB29423.1| 474|Homo sapiens vitamin D-binding protein... 29 9.0
M12654-1|AAA52173.1| 474|Homo sapiens GC protein. 29 9.0
L10641-1|AAA61704.1| 474|Homo sapiens vitamin D-binding protein... 29 9.0
BC057228-1|AAH57228.1| 474|Homo sapiens group-specific componen... 29 9.0
AK223458-1|BAD97178.1| 474|Homo sapiens vitamin D-binding prote... 29 9.0
AF223939-1|AAK00630.1| 2073|Homo sapiens ninein isotype 3 protein. 29 9.0
AF223938-1|AAK00629.1| 2069|Homo sapiens ninein isotype 2 protein. 29 9.0
AF223937-1|AAK00628.1| 2029|Homo sapiens ninein isotype 1 protein. 29 9.0
>BC117178-1|AAI17179.1| 1332|Homo sapiens NPC1L1 protein protein.
Length = 1332
Score = 30.3 bits (65), Expect = 3.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 301 HDCCTASAISFLKSPATGLHLTESRKHLTNSSRVDW 194
+DCC S + + ++ T L LT ++ + +S+VDW
Sbjct: 483 YDCCINSLLQYFQNNRTLLLLTANQTLMGQTSQVDW 518
>AY515256-1|AAS56939.1| 1332|Homo sapiens NPC1L1 splice variant
protein.
Length = 1332
Score = 30.3 bits (65), Expect = 3.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 301 HDCCTASAISFLKSPATGLHLTESRKHLTNSSRVDW 194
+DCC S + + ++ T L LT ++ + +S+VDW
Sbjct: 483 YDCCINSLLQYFQNNRTLLLLTANQTLMGQTSQVDW 518
>AY437865-1|AAR97886.1| 1332|Homo sapiens Niemann-Pick C1-like 1
protein.
Length = 1332
Score = 30.3 bits (65), Expect = 3.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 301 HDCCTASAISFLKSPATGLHLTESRKHLTNSSRVDW 194
+DCC S + + ++ T L LT ++ + +S+VDW
Sbjct: 483 YDCCINSLLQYFQNNRTLLLLTANQTLMGQTSQVDW 518
>AF192523-1|AAF20397.1| 724|Homo sapiens truncated Niemann-Pick
C1-like protein 1 protein.
Length = 724
Score = 30.3 bits (65), Expect = 3.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 301 HDCCTASAISFLKSPATGLHLTESRKHLTNSSRVDW 194
+DCC S + + ++ T L LT ++ + +S+VDW
Sbjct: 483 YDCCINSLLQYFQNNRTLLLLTANQTLMGQTSQVDW 518
>AF192522-1|AAF20396.1| 1359|Homo sapiens Niemann-Pick C1-like
protein 1 protein.
Length = 1359
Score = 30.3 bits (65), Expect = 3.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 301 HDCCTASAISFLKSPATGLHLTESRKHLTNSSRVDW 194
+DCC S + + ++ T L LT ++ + +S+VDW
Sbjct: 483 YDCCINSLLQYFQNNRTLLLLTANQTLMGQTSQVDW 518
>X03178-1|CAA26938.1| 474|Homo sapiens protein ( Human mRNA for
group-specific component (GC). ).
Length = 474
Score = 29.1 bits (62), Expect = 9.0
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +3
Query: 195 QSTLEEFVKC--FLDSVKCNPVAGDF-KKDIAEAVQQSCEKCTDAQKHIFKRFLEALKEK 365
+ TL+ +C DS C G KK+++ + + E C D ++ F + + L E+
Sbjct: 366 EPTLKSLGECCDVEDSTTCFNAKGPLLKKELSSFIDKGQELCADYSENTFTEYKKKLAER 425
Query: 366 LPAE 377
L A+
Sbjct: 426 LKAK 429
>S67480-1|AAB29423.1| 474|Homo sapiens vitamin D-binding
protein/group specific component protein.
Length = 474
Score = 29.1 bits (62), Expect = 9.0
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +3
Query: 195 QSTLEEFVKC--FLDSVKCNPVAGDF-KKDIAEAVQQSCEKCTDAQKHIFKRFLEALKEK 365
+ TL+ +C DS C G KK+++ + + E C D ++ F + + L E+
Sbjct: 366 EPTLKSLGECCDVEDSTTCFNAKGPLLKKELSSFIDKGQELCADYSENTFTEYKKKLAER 425
Query: 366 LPAE 377
L A+
Sbjct: 426 LKAK 429
>M12654-1|AAA52173.1| 474|Homo sapiens GC protein.
Length = 474
Score = 29.1 bits (62), Expect = 9.0
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +3
Query: 195 QSTLEEFVKC--FLDSVKCNPVAGDF-KKDIAEAVQQSCEKCTDAQKHIFKRFLEALKEK 365
+ TL+ +C DS C G KK+++ + + E C D ++ F + + L E+
Sbjct: 366 EPTLKSLGECCDVEDSTTCFNAKGPLLKKELSSFIDKGQELCADYSENTFTEYKKKLAER 425
Query: 366 LPAE 377
L A+
Sbjct: 426 LKAK 429
>L10641-1|AAA61704.1| 474|Homo sapiens vitamin D-binding protein
protein.
Length = 474
Score = 29.1 bits (62), Expect = 9.0
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +3
Query: 195 QSTLEEFVKC--FLDSVKCNPVAGDF-KKDIAEAVQQSCEKCTDAQKHIFKRFLEALKEK 365
+ TL+ +C DS C G KK+++ + + E C D ++ F + + L E+
Sbjct: 366 EPTLKSLGECCDVEDSTTCFNAKGPLLKKELSSFIDKGQELCADYSENTFTEYKKKLAER 425
Query: 366 LPAE 377
L A+
Sbjct: 426 LKAK 429
>BC057228-1|AAH57228.1| 474|Homo sapiens group-specific component
(vitamin D binding protein) protein.
Length = 474
Score = 29.1 bits (62), Expect = 9.0
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +3
Query: 195 QSTLEEFVKC--FLDSVKCNPVAGDF-KKDIAEAVQQSCEKCTDAQKHIFKRFLEALKEK 365
+ TL+ +C DS C G KK+++ + + E C D ++ F + + L E+
Sbjct: 366 EPTLKSLGECCDVEDSTTCFNAKGPLLKKELSSFIDKGQELCADYSENTFTEYKKKLAER 425
Query: 366 LPAE 377
L A+
Sbjct: 426 LKAK 429
>AK223458-1|BAD97178.1| 474|Homo sapiens vitamin D-binding protein
precursor variant protein.
Length = 474
Score = 29.1 bits (62), Expect = 9.0
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +3
Query: 195 QSTLEEFVKC--FLDSVKCNPVAGDF-KKDIAEAVQQSCEKCTDAQKHIFKRFLEALKEK 365
+ TL+ +C DS C G KK+++ + + E C D ++ F + + L E+
Sbjct: 366 EPTLKSLGECCDVEDSTTCFNAKGPLLKKELSSFIDKGQELCADYSENTFTEYKKKLAER 425
Query: 366 LPAE 377
L A+
Sbjct: 426 LKAK 429
>AF223939-1|AAK00630.1| 2073|Homo sapiens ninein isotype 3 protein.
Length = 2073
Score = 29.1 bits (62), Expect = 9.0
Identities = 18/74 (24%), Positives = 33/74 (44%)
Frame = +3
Query: 141 EKYTTENDDLDIEAVANDQSTLEEFVKCFLDSVKCNPVAGDFKKDIAEAVQQSCEKCTDA 320
EK+T E ++L E + Q L+E + +CN + Q+ E+C A
Sbjct: 758 EKHTLEKEELRKELLEKHQRELQEGREKM--ETECNRRTSQIEAQFQSDCQKVTERCESA 815
Query: 321 QKHIFKRFLEALKE 362
+ + R+ + LK+
Sbjct: 816 LQSLEGRYRQELKD 829
>AF223938-1|AAK00629.1| 2069|Homo sapiens ninein isotype 2 protein.
Length = 2069
Score = 29.1 bits (62), Expect = 9.0
Identities = 18/74 (24%), Positives = 33/74 (44%)
Frame = +3
Query: 141 EKYTTENDDLDIEAVANDQSTLEEFVKCFLDSVKCNPVAGDFKKDIAEAVQQSCEKCTDA 320
EK+T E ++L E + Q L+E + +CN + Q+ E+C A
Sbjct: 758 EKHTLEKEELRKELLEKHQRELQEGREKM--ETECNRRTSQIEAQFQSDCQKVTERCESA 815
Query: 321 QKHIFKRFLEALKE 362
+ + R+ + LK+
Sbjct: 816 LQSLEGRYRQELKD 829
>AF223937-1|AAK00628.1| 2029|Homo sapiens ninein isotype 1 protein.
Length = 2029
Score = 29.1 bits (62), Expect = 9.0
Identities = 18/74 (24%), Positives = 33/74 (44%)
Frame = +3
Query: 141 EKYTTENDDLDIEAVANDQSTLEEFVKCFLDSVKCNPVAGDFKKDIAEAVQQSCEKCTDA 320
EK+T E ++L E + Q L+E + +CN + Q+ E+C A
Sbjct: 758 EKHTLEKEELRKELLEKHQRELQEGREKM--ETECNRRTSQIEAQFQSDCQKVTERCESA 815
Query: 321 QKHIFKRFLEALKE 362
+ + R+ + LK+
Sbjct: 816 LQSLEGRYRQELKD 829
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,060,737
Number of Sequences: 237096
Number of extensions: 1411296
Number of successful extensions: 4113
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4113
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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