Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G10
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17520.1 68416.m02238 late embryogenesis abundant domain-cont...    34   0.046
At3g57570.1 68416.m06410 expressed protein                             30   1.00 
At3g54670.1 68416.m06049 structural maintenance of chromosomes (...    29   2.3  
At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot...    28   3.0  
At4g33150.2 68417.m04723 lysine-ketoglutarate reductase/saccharo...    27   7.0  
At4g33150.1 68417.m04722 lysine-ketoglutarate reductase/saccharo...    27   7.0  
At2g42250.1 68415.m05230 cytochrome P450 family protein similar ...    27   7.0  
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR...    27   9.3  
At1g16650.1 68414.m01994 expressed protein                             27   9.3  

>At3g17520.1 68416.m02238 late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein low similarity to PIR|S04045|S04045 embryonic
           abundant protein D-29 [Gossypium hirsutum]; contains
           Pfam profile PF02987: Late embryogenesis abundant
           protein
          Length = 298

 Score = 34.3 bits (75), Expect = 0.046
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
 Frame = +3

Query: 132 YAKEKYTTENDDLDIEAVANDQSTLEEFVKCFLDSVKCNPVAGDFKKDIAEAVQQSCEKC 311
           +AKEK   +N+D++     N   T+ E  K   ++ K    AGD K+ +AE V+ + EK 
Sbjct: 157 WAKEKIGIKNEDINSP---NLGETVSEKAKEAKEAAKRK--AGDAKEKLAETVETAKEKA 211

Query: 312 TDAQ----------KHIFKRFLEALKEKLPAEYEAFKNKYD 404
           +D            K   +R  ++ KEK+   YE  K+K D
Sbjct: 212 SDMTSAAKEKAEKLKEEAERESKSAKEKIKESYETAKSKAD 252


>At3g57570.1 68416.m06410 expressed protein 
          Length = 1057

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 165  DLDIEAVANDQSTLEEFVKCFLDSVKC-NPVAGDFKKDIAEAVQQSCEKCTDAQKHIFKR 341
            D  I  +  D+S      K   D + C NP+   F+  +A  +  +C+K  ++ K  F R
Sbjct: 880  DYTIHCLIEDRSNCSSIPKLSTDILTCENPLPIPFRLCMANVIISACQKNPESSKKTFAR 939


>At3g54670.1 68416.m06049 structural maintenance of chromosomes
           (SMC) family protein similar to SMC1 protein [Bos
           taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
           protein) [Xenopus laevis] GI:3328231; contains Pfam
           profiles PF02483: SMC family C-terminal domain, PF02463:
           RecF/RecN/SMC N terminal domain
          Length = 1257

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
 Frame = +3

Query: 159 NDDLDIEAVANDQSTLEEFVKCFLDSVKCNPVAGDFKKDIAEAVQQSCEKCTDAQKHI-- 332
           N+D+D E  +N +  + E  K   ++ K       + K+IA+  ++  EK +   K    
Sbjct: 249 NEDVDSEK-SNRKDVMRELEKFEREAGKRKVEQAKYLKEIAQREKKIAEKSSKLGKIQPE 307

Query: 333 ---FKRFLEALKEKLPAEYEAFKNKYDPEGKHFAALEAAVAKF*TYYKKNDLF 482
              FK  +  +K K+    +    +   +GKH   +E          KK +LF
Sbjct: 308 LLRFKEEIARIKAKIETNRKDVDKRKKEKGKHSKEIEQMQKSIKELNKKMELF 360


>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 813

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 312 TDAQKHIFKRFLEALKEKLPAEYEAFKNKYDPEGKHFAALEAAV 443
           T+ ++H   R LE+L ++LPA    F  K++  G   A  E  +
Sbjct: 331 TEVERHRLGRQLESLLDELPAHIIDFLKKHNSNGGEIAEDEIEI 374


>At4g33150.2 68417.m04723 lysine-ketoglutarate
           reductase/saccharopine dehydrogenase bifunctional enzyme
           identical to lysine-ketoglutarate reductase/saccharopine
           dehydrogenase GI:2052508 from [Arabidopsis thaliana]
          Length = 1064

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 114 VVLASVYAKEKYTTENDDLDIEAVANDQSTLEEFVK 221
           V++AS+Y K+   T     D+EAV  D S  E  +K
Sbjct: 633 VIVASLYLKDAKETVEGISDVEAVRLDVSDSESLLK 668


>At4g33150.1 68417.m04722 lysine-ketoglutarate
           reductase/saccharopine dehydrogenase bifunctional enzyme
           identical to lysine-ketoglutarate reductase/saccharopine
           dehydrogenase GI:2052508 from [Arabidopsis thaliana]
          Length = 1064

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 114 VVLASVYAKEKYTTENDDLDIEAVANDQSTLEEFVK 221
           V++AS+Y K+   T     D+EAV  D S  E  +K
Sbjct: 633 VIVASLYLKDAKETVEGISDVEAVRLDVSDSESLLK 668


>At2g42250.1 68415.m05230 cytochrome P450 family protein similar to
           cytochrome P450 93A1 (SP:Q42798) [Glycine max]
          Length = 514

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 285 AVQQSCEKCTDAQKHIFKRFLEALKEKLPAEYEAFKNK 398
           A+ +  E   DA + I +RFLE+ +EK+      FK +
Sbjct: 405 AIMRDSELWADADRFIPERFLESSEEKIGEHQMQFKGQ 442


>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1226

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 198  STLEEFVKCFLDSVKCNPVAGDFKKDIAEAVQQSCEKCTDAQK 326
            +T ++    F+    CN +    K++I+   Q+ C+   DAQK
Sbjct: 879  TTAQQIYSTFI-LTNCNKLERSAKEEISSFAQRKCQLLLDAQK 920


>At1g16650.1 68414.m01994 expressed protein
          Length = 521

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 364 NCLRNMKRSRTNTIPKENILPHWKLPLLNFKHIIKRM 474
           +CL++ K      IP   +  HW   L  F H ++ +
Sbjct: 54  SCLKDEKPENILLIPSGGVQDHWPASLKKFVHTLRSL 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,739,461
Number of Sequences: 28952
Number of extensions: 213649
Number of successful extensions: 763
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)