Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G09
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    30   0.17 
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    25   6.3  

>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 209 TNTFLVTGHIDQCEIPLWASNNLLRHFS 292
           T  +L T H+DQ  I LW + ++ +H S
Sbjct: 624 TGDYLATTHVDQVGISLWTNLSMFKHVS 651


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 388 PSNGICAARDVSNSFGR 338
           P++G CA + V+NSF +
Sbjct: 829 PNSGFCAVQSVANSFAK 845


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,866
Number of Sequences: 5004
Number of extensions: 38859
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)